Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-154
Cow position:
Alignm length: 157
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 134

Conread position: 1-227
Cow position:
Alignm length: 231
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 112

Conread position: 1-249
Cow position:
Alignm length: 254
Alignm identity: 191
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 16, 136

Conread position: 1-254
Cow position:
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-261
Cow position:
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 183

Conread position: 1-278
Cow position:
Alignm length: 283
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 87

Conread position: 1-280
Cow position:
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 65

Conread position: 1-286
Cow position:
Alignm length: 294
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-293
Cow position:
Alignm length: 296
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 145

Conread position: 1-309
Cow position:
Alignm length: 319
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 1-317
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-318
Cow position:
Alignm length: 329
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 126

Conread position: 1-320
Cow position:
Alignm length: 331
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 65

Conread position: 1-322
Cow position:
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-322
Cow position:
Alignm length: 327
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 40

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 51

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 161

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-324
Cow position:
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 38

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 1-327
Cow position:
Alignm length: 332
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 121

Conread position: 1-330
Cow position:
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 222

Conread position: 1-333
Cow position:
Alignm length: 339
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 256

Conread position: 1-334
Cow position:
Alignm length: 358
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-334
Cow position:
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 264

Conread position: 1-335
Cow position:
Alignm length: 344
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-336
Cow position:
Alignm length: 348
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 65

Conread position: 1-337
Cow position:
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 94

Conread position: 1-337
Cow position:
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-339
Cow position:
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 111

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 7

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 344

Conread position: 1-342
Cow position:
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-343
Cow position:
Alignm length: 357
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 64

Conread position: 1-343
Cow position:
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 177

Conread position: 1-343
Cow position:
Alignm length: 353
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 255
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 7, 37

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 95

Conread position: 1-348
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 183

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 268

Conread position: 1-358
Cow position:
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 94

Conread position: 1-382
Cow position:
Alignm length: 392
Alignm identity: 258
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 67

Conread position: 1-385
Cow position:
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 1-405
Cow position:
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 10

Conread position: 1-409
Cow position:
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 375

Conread position: 1-410
Cow position:
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 38

Conread position: 1-558
Cow position:
Alignm length: 588
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 79

Conread position: 1-564
Cow position:
Alignm length: 572
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 216

Conread position: 1-565
Cow position:
Alignm length: 587
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 124

Conread position: 1-565
Cow position:
Alignm length: 583
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 36

Conread position: 1-565
Cow position:
Alignm length: 577
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 46

Conread position: 2-220
Cow position:
Alignm length: 219
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 2-316
Cow position:
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 9

Conread position: 2-317
Cow position:
Alignm length: 324
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-342
Cow position:
Alignm length: 349
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 2-343
Cow position:
Alignm length: 356
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 155

Conread position: 2-348
Cow position:
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 9

Conread position: 2-563
Cow position:
Alignm length: 571
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 18

Conread position: 5-324
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 7-349
Cow position:
Alignm length: 350
Alignm identity: 240
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 204, 30

Conread position: 7-390
Cow position:
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 238

Conread position: 7-391
Cow position:
Alignm length: 392
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 255

Conread position: 7-540
Cow position:
Alignm length: 540
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 61

Conread position: 8-340
Cow position:
Alignm length: 343
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 8-405
Cow position:
Alignm length: 404
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 347

Conread position: 9-520
Cow position:
Alignm length: 521
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 32

Conread position: 11-307
Cow position:
Alignm length: 303
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 152, 30

Conread position: 12-246
Cow position:
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 56

Conread position: 12-317
Cow position:
Alignm length: 311
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 81

Conread position: 12-324
Cow position:
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 67, 77

Conread position: 12-349
Cow position:
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 0

Conread position: 12-352
Cow position:
Alignm length: 343
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 277

Conread position: 16-317
Cow position:
Alignm length: 308
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 42

Conread position: 17-324
Cow position:
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 92

Conread position: 17-336
Cow position:
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 313

Conread position: 17-342
Cow position:
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-342
Cow position:
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 236
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 62, 46

Conread position: 17-352
Cow position:
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 302

Conread position: 17-353
Cow position:
Alignm length: 339
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 274

Conread position: 20-390
Cow position:
Alignm length: 383
Alignm identity: 259
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 148, 11

Conread position: 21-277
Cow position:
Alignm length: 257
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 21-402
Cow position:
Alignm length: 392
Alignm identity: 268
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 12, 31

Conread position: 21-406
Cow position:
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 207

Conread position: 22-326
Cow position:
Alignm length: 307
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 174, 17

Conread position: 26-194
Cow position:
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 146, 63

Conread position: 27-300
Cow position:
Alignm length: 275
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 255, 261

Conread position: 27-405
Cow position:
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 94

Conread position: 28-247
Cow position:
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 185, 190

Conread position: 28-287
Cow position:
Alignm length: 272
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 45

Conread position: 30-353
Cow position:
Alignm length: 329
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 12

Conread position: 31-289
Cow position:
Alignm length: 259
Alignm identity: 170
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 42-342
Cow position:
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 13

Conread position: 43-410
Cow position:
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 232

Conread position: 51-324
Cow position:
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 16

Conread position: 51-342
Cow position:
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 282

Conread position: 64-393
Cow position:
Alignm length: 341
Alignm identity: 239
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 78, 24

Conread position: 72-382
Cow position:
Alignm length: 319
Alignm identity: 219
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 203, 49

Conread position: 112-342
Cow position:
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 113-322
Cow position:
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 86

Conread position: 138-561
Cow position:
Alignm length: 449
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 103

Conread position: 158-324
Cow position:
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 132, 0

Conread position: 159-405
Cow position:
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 162-343
Cow position:
Alignm length: 189
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 127, 78

Conread position: 170-324
Cow position:
Alignm length: 161
Alignm identity: 129
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 104, 0

Conread position: 174-565
Cow position:
Alignm length: 392
Alignm identity: 271
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 102, 0

Conread position: 177-322
Cow position:
Alignm length: 151
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 108, 0

Conread position: 182-558
Cow position:
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 144

Conread position: 368-526
Cow position:
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 55

Show alignments to all cow chromosomes.