Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-136
Cow position:
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 1-154
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 1-195
Cow position:
Alignm length: 201
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 1-201
Cow position:
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 91

Conread position: 1-234
Cow position:
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-263
Cow position:
Alignm length: 273
Alignm identity: 198
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 30, 209

Conread position: 1-268
Cow position:
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-273
Cow position:
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 67

Conread position: 1-287
Cow position:
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 194

Conread position: 1-287
Cow position:
Alignm length: 289
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 20

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 193

Conread position: 1-289
Cow position:
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-317
Cow position:
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 65

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 161

Conread position: 1-324
Cow position:
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 94

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 1-324
Cow position:
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-334
Cow position:
Alignm length: 344
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 195

Conread position: 1-337
Cow position:
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 292

Conread position: 1-340
Cow position:
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 125

Conread position: 1-342
Cow position:
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 50

Conread position: 1-342
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 1-342
Cow position:
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-342
Cow position:
Alignm length: 353
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 59

Conread position: 1-343
Cow position:
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 261

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-343
Cow position:
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-343
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 290

Conread position: 1-344
Cow position:
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 263

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 334

Conread position: 1-359
Cow position:
Alignm length: 374
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 1-359
Cow position:
Alignm length: 372
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 68

Conread position: 1-381
Cow position:
Alignm length: 393
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 355

Conread position: 1-390
Cow position:
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 121

Conread position: 1-393
Cow position:
Alignm length: 403
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 1-394
Cow position:
Alignm length: 408
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-399
Cow position:
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 250

Conread position: 1-405
Cow position:
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 56

Conread position: 1-410
Cow position:
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 260

Conread position: 1-476
Cow position:
Alignm length: 487
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 2-223
Cow position:
Alignm length: 222
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 2-258
Cow position:
Alignm length: 257
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 2-316
Cow position:
Alignm length: 320
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 9

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 319
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-323
Cow position:
Alignm length: 331
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 9

Conread position: 2-324
Cow position:
Alignm length: 330
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-324
Cow position:
Alignm length: 330
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-337
Cow position:
Alignm length: 344
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 178

Conread position: 3-142
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 3-289
Cow position:
Alignm length: 289
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-352
Cow position:
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 67

Conread position: 7-317
Cow position:
Alignm length: 324
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 99

Conread position: 7-322
Cow position:
Alignm length: 324
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 151

Conread position: 7-330
Cow position:
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 7-360
Cow position:
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 88

Conread position: 7-405
Cow position:
Alignm length: 415
Alignm identity: 274
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 26, 112

Conread position: 8-170
Cow position:
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 8-218
Cow position:
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 51

Conread position: 8-275
Cow position:
Alignm length: 278
Alignm identity: 202
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 160, 223

Conread position: 8-318
Cow position:
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 257, 195

Conread position: 8-372
Cow position:
Alignm length: 372
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 11

Conread position: 8-373
Cow position:
Alignm length: 379
Alignm identity: 259
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 165

Conread position: 11-289
Cow position:
Alignm length: 282
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 80

Conread position: 12-407
Cow position:
Alignm length: 404
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 255

Conread position: 13-289
Cow position:
Alignm length: 278
Alignm identity: 204
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 105, 26

Conread position: 13-323
Cow position:
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 13-330
Cow position:
Alignm length: 333
Alignm identity: 235
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 30

Conread position: 14-348
Cow position:
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 133

Conread position: 17-322
Cow position:
Alignm length: 311
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 150

Conread position: 17-324
Cow position:
Alignm length: 313
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 239

Conread position: 17-334
Cow position:
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 317

Conread position: 17-341
Cow position:
Alignm length: 333
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 71

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 83

Conread position: 18-172
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 20-359
Cow position:
Alignm length: 349
Alignm identity: 226
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 7, 208

Conread position: 21-287
Cow position:
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 21-335
Cow position:
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 21-345
Cow position:
Alignm length: 334
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 101

Conread position: 21-390
Cow position:
Alignm length: 387
Alignm identity: 257
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 44, 75

Conread position: 23-359
Cow position:
Alignm length: 344
Alignm identity: 240
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 196

Conread position: 24-257
Cow position:
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 27-154
Cow position:
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-317
Cow position:
Alignm length: 303
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 27-322
Cow position:
Alignm length: 301
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 27-324
Cow position:
Alignm length: 304
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 214

Conread position: 27-341
Cow position:
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 28

Conread position: 28-283
Cow position:
Alignm length: 256
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 0

Conread position: 30-321
Cow position:
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 141, 63

Conread position: 35-392
Cow position:
Alignm length: 365
Alignm identity: 249
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 103

Conread position: 51-321
Cow position:
Alignm length: 277
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 191

Conread position: 52-245
Cow position:
Alignm length: 197
Alignm identity: 156
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 0

Conread position: 55-247
Cow position:
Alignm length: 193
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 56-322
Cow position:
Alignm length: 272
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 0

Conread position: 68-406
Cow position:
Alignm length: 347
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 220, 59

Conread position: 73-283
Cow position:
Alignm length: 211
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-334
Cow position:
Alignm length: 267
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 130

Conread position: 75-334
Cow position:
Alignm length: 261
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 251, 181

Conread position: 82-322
Cow position:
Alignm length: 247
Alignm identity: 177
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 6, 0

Conread position: 83-318
Cow position:
Alignm length: 241
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 209, 12

Conread position: 87-322
Cow position:
Alignm length: 241
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 88-289
Cow position:
Alignm length: 202
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 103-287
Cow position:
Alignm length: 185
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 120-348
Cow position:
Alignm length: 234
Alignm identity: 173
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 170, 217

Conread position: 120-565
Cow position:
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 123-322
Cow position:
Alignm length: 205
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 128-405
Cow position:
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 203

Conread position: 129-380
Cow position:
Alignm length: 259
Alignm identity: 174
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 161, 7

Conread position: 140-322
Cow position:
Alignm length: 188
Alignm identity: 149
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 145, 0

Conread position: 146-324
Cow position:
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 129, 135

Conread position: 151-348
Cow position:
Alignm length: 203
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 152-341
Cow position:
Alignm length: 197
Alignm identity: 150
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 163-289
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 190-398
Cow position:
Alignm length: 214
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 99, 0

Conread position: 289-497
Cow position:
Alignm length: 211
Alignm identity: 149
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 44, 31

Conread position: 437-565
Cow position:
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.