Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpigcf0_020383.5.5
        

               Conread position:
               73-399
               

               Cow position:
               chr6:52245879-52246196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               239
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               73-535
               

               Cow position:
               chr6:65935274-65934824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               83-500
               

               Cow position:
               chr6:40251418-40251000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 111
               

               Conread position:
               89-492
               

               Cow position:
               chr6:40031423-40031839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               21, 68
               

               Conread position:
               89-526
               

               Cow position:
               chr6:15471419-15470986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 70
               

               Conread position:
               95-501
               

               Cow position:
               chr6:13740950-13741353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               333, 92
               

               Conread position:
               96-524
               

               Cow position:
               chr6:2087921-2088337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               97-525
               

               Cow position:
               chr6:618821-619221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               98-501
               

               Cow position:
               chr6:49411417-49411024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 50
               

               Conread position:
               98-533
               

               Cow position:
               chr6:41413773-41413363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 9
               

               Conread position:
               98-542
               

               Cow position:
               chr6:59507611-59508035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               99-308
               

               Cow position:
               chr6:10681393-10681594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               99-398
               

               Cow position:
               chr6:12352245-12352539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-404
               

               Cow position:
               chr6:32125355-32125655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               99-424
               

               Cow position:
               chr6:13695767-13695449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               28, 22
               

               Conread position:
               99-427
               

               Cow position:
               chr6:46225556-46225235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 19
               

               Conread position:
               99-430
               

               Cow position:
               chr6:39912731-39913055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-444
               

               Cow position:
               chr6:6278196-6278525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               13, 23
               

               Conread position:
               99-457
               

               Cow position:
               chr6:33301077-33301429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 10
               

               Conread position:
               99-469
               

               Cow position:
               chr6:39136907-39137264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               99-483
               

               Cow position:
               chr6:9839727-9839343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 64
               

               Conread position:
               99-488
               

               Cow position:
               chr6:8210322-8209941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               99-496
               

               Cow position:
               chr6:29085651-29086042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               99-501
               

               Cow position:
               chr6:1797034-1797430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:3152624-3153017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               99-501
               

               Cow position:
               chr6:7448904-7449300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:7467242-7466846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:11869527-11869132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:16645293-16645676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               281
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:18803650-18803254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:18912326-18911929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:20514988-20515380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 20
               

               Conread position:
               99-501
               

               Cow position:
               chr6:25218188-25218584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:35873323-35872930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               99-501
               

               Cow position:
               chr6:36901419-36901815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 15
               

               Conread position:
               99-501
               

               Cow position:
               chr6:39359072-39358680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 20
               

               Conread position:
               99-501
               

               Cow position:
               chr6:46948224-46948617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               99-501
               

               Cow position:
               chr6:53543074-53542664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               287
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-502
               

               Cow position:
               chr6:16737283-16737677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               99-504
               

               Cow position:
               chr6:47988334-47988719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 10
               

               Conread position:
               99-507
               

               Cow position:
               chr6:14928860-14929256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               99-510
               

               Cow position:
               chr6:3118988-3118576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 46
               

               Conread position:
               99-525
               

               Cow position:
               chr6:6838983-6839415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               211, 46
               

               Conread position:
               99-526
               

               Cow position:
               chr6:40158132-40157706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               99-532
               

               Cow position:
               chr6:54140204-54139782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               284
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               13, 24
               

               Conread position:
               99-534
               

               Cow position:
               chr6:26654527-26654950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 27
               

               Conread position:
               100-501
               

               Cow position:
               chr6:6595844-6596242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 9
               

               Conread position:
               100-501
               

               Cow position:
               chr6:55239098-55239495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               101-310
               

               Cow position:
               chr6:32262952-32262753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 6
               

               Conread position:
               101-320
               

               Cow position:
               chr6:17415243-17415026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               12, 62
               

               Conread position:
               101-326
               

               Cow position:
               chr6:39957474-39957700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               23, 8
               

               Conread position:
               101-335
               

               Cow position:
               chr6:33896240-33896018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               101-372
               

               Cow position:
               chr6:44905799-44906064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               101-448
               

               Cow position:
               chr6:4274456-4274791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 6
               

               Conread position:
               101-496
               

               Cow position:
               chr6:10236593-10236974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 88
               

               Conread position:
               101-501
               

               Cow position:
               chr6:16593350-16593749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 6
               

               Conread position:
               101-504
               

               Cow position:
               chr6:47574192-47574587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               101-506
               

               Cow position:
               chr6:51385636-51386061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 96
               

               Conread position:
               101-525
               

               Cow position:
               chr6:1096330-1095902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               101-526
               

               Cow position:
               chr6:6721374-6721802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               101-526
               

               Cow position:
               chr6:18571158-18570741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               290
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               21, 90
               

               Conread position:
               101-528
               

               Cow position:
               chr6:50973887-50973472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 6
               

               Conread position:
               101-529
               

               Cow position:
               chr6:47154799-47155204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 59
               

               Conread position:
               101-534
               

               Cow position:
               chr6:62961300-62961722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               101-547
               

               Cow position:
               chr6:50526911-50527350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               101-550
               

               Cow position:
               chr6:51879135-51879574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               101-572
               

               Cow position:
               chr6:51191036-51191505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 6
               

               Conread position:
               102-455
               

               Cow position:
               chr6:13591714-13592072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 91
               

               Conread position:
               102-491
               

               Cow position:
               chr6:529438-529061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 29
               

               Conread position:
               102-510
               

               Cow position:
               chr6:17757316-17757699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               279
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               390, 12
               

               Conread position:
               102-531
               

               Cow position:
               chr6:52557219-52556792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 89
               

               Conread position:
               102-547
               

               Cow position:
               chr6:45065756-45065341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 60
               

               Conread position:
               105-368
               

               Cow position:
               chr6:50571596-50571862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               105-413
               

               Cow position:
               chr6:8535393-8535083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               105-426
               

               Cow position:
               chr6:54472248-54471920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 85
               

               Conread position:
               105-444
               

               Cow position:
               chr6:46283695-46283359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 82
               

               Conread position:
               105-497
               

               Cow position:
               chr6:46293068-46292674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               105-501
               

               Cow position:
               chr6:1834400-1834799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               105-501
               

               Cow position:
               chr6:11289062-11288663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 90
               

               Conread position:
               105-501
               

               Cow position:
               chr6:15275835-15275436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 60
               

               Conread position:
               105-501
               

               Cow position:
               chr6:17049778-17050175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 181
               

               Conread position:
               105-501
               

               Cow position:
               chr6:20552838-20552448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 81
               

               Conread position:
               105-501
               

               Cow position:
               chr6:25790312-25789933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               105-501
               

               Cow position:
               chr6:28112433-28112033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               105-501
               

               Cow position:
               chr6:36531679-36532080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 89
               

               Conread position:
               105-501
               

               Cow position:
               chr6:51717962-51718360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               105-504
               

               Cow position:
               chr6:1274449-1274050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               106-378
               

               Cow position:
               chr6:51150348-51150623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               18, 59
               

               Conread position:
               106-415
               

               Cow position:
               chr6:61632333-61632028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               106-460
               

               Cow position:
               chr6:46764000-46763643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               18, 87
               

               Conread position:
               106-461
               

               Cow position:
               chr6:24988447-24988806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 87
               

               Conread position:
               106-488
               

               Cow position:
               chr6:47977339-47977722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 93
               

               Conread position:
               106-490
               

               Cow position:
               chr6:6459524-6459903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 44
               

               Conread position:
               106-494
               

               Cow position:
               chr6:12926979-12927364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               106-501
               

               Cow position:
               chr6:2089681-2090063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               106-502
               

               Cow position:
               chr6:19059682-19060079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 40
               

               Conread position:
               106-503
               

               Cow position:
               chr6:35884217-35884625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 73
               

               Conread position:
               106-528
               

               Cow position:
               chr6:19328583-19328158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 73
               

               Conread position:
               107-455
               

               Cow position:
               chr6:55345908-55345567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 59
               

               Conread position:
               107-476
               

               Cow position:
               chr6:14759111-14758756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               5, 35
               

               Conread position:
               107-501
               

               Cow position:
               chr6:7175858-7175468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               108-415
               

               Cow position:
               chr6:12099840-12100138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               108-526
               

               Cow position:
               chr6:33984213-33984625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 30
               

               Conread position:
               108-542
               

               Cow position:
               chr6:16132408-16132845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               109-537
               

               Cow position:
               chr6:16596409-16596826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               299
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 83
               

               Conread position:
               110-425
               

               Cow position:
               chr6:28978083-28977770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 79
               

               Conread position:
               110-449
               

               Cow position:
               chr6:31880376-31880037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 67
               

               Conread position:
               110-492
               

               Cow position:
               chr6:9322419-9322786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               14, 37
               

               Conread position:
               110-501
               

               Cow position:
               chr6:32420357-32420744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               110-534
               

               Cow position:
               chr6:6166665-6167085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 213
               

               Conread position:
               111-295
               

               Cow position:
               chr6:23889678-23889496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               20, 13
               

               Conread position:
               112-448
               

               Cow position:
               chr6:43797482-43797148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               27, 8
               

               Conread position:
               112-482
               

               Cow position:
               chr6:49733201-49733571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 50
               

               Conread position:
               112-501
               

               Cow position:
               chr6:4389129-4389516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 76
               

               Conread position:
               112-524
               

               Cow position:
               chr6:27342011-27342409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               278
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               11, 25
               

               Conread position:
               112-536
               

               Cow position:
               chr6:14306348-14306777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               113-445
               

               Cow position:
               chr6:41645369-41645039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               19, 38
               

               Conread position:
               113-526
               

               Cow position:
               chr6:48579296-48578882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 8
               

               Conread position:
               114-501
               

               Cow position:
               chr6:366488-366871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               196, 31
               

               Conread position:
               116-501
               

               Cow position:
               chr6:16418270-16417886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 72
               

               Conread position:
               116-543
               

               Cow position:
               chr6:11466641-11466227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 31
               

               Conread position:
               118-484
               

               Cow position:
               chr6:52001651-52002013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               118-501
               

               Cow position:
               chr6:182130-181737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               118-526
               

               Cow position:
               chr6:62487061-62486672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 23
               

               Conread position:
               118-527
               

               Cow position:
               chr6:40496856-40497250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 12
               

               Conread position:
               119-498
               

               Cow position:
               chr6:44494638-44494996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               120-501
               

               Cow position:
               chr6:63040908-63040530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 46
               

               Conread position:
               121-287
               

               Cow position:
               chr6:52697015-52697181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-292
               

               Cow position:
               chr6:3016538-3016703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               121-297
               

               Cow position:
               chr6:55946608-55946435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               121-301
               

               Cow position:
               chr6:27475842-27476019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-312
               

               Cow position:
               chr6:2545619-2545805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               121-324
               

               Cow position:
               chr6:2186356-2186155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-325
               

               Cow position:
               chr6:32427556-32427751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-325
               

               Cow position:
               chr6:49391914-49391710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               23, 69
               

               Conread position:
               121-330
               

               Cow position:
               chr6:66751195-66751393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               16, 66
               

               Conread position:
               121-340
               

               Cow position:
               chr6:34405753-34405970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               14, 27
               

               Conread position:
               121-351
               

               Cow position:
               chr6:52240405-52240181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               15, 56
               

               Conread position:
               121-397
               

               Cow position:
               chr6:28107899-28107637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               121-404
               

               Cow position:
               chr6:3484993-3484713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-408
               

               Cow position:
               chr6:14897607-14897891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               121-415
               

               Cow position:
               chr6:7216221-7216501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               121-426
               

               Cow position:
               chr6:58031203-58031494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               23, 38
               

               Conread position:
               121-441
               

               Cow position:
               chr6:35825473-35825779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               121-444
               

               Cow position:
               chr6:11193156-11192841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               24, 68
               

               Conread position:
               121-454
               

               Cow position:
               chr6:34548459-34548780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 20
               

               Conread position:
               121-454
               

               Cow position:
               chr6:58036707-58037038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 69
               

               Conread position:
               121-461
               

               Cow position:
               chr6:41410027-41410366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-462
               

               Cow position:
               chr6:11721782-11721450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               121-468
               

               Cow position:
               chr6:5946349-5946003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 39
               

               Conread position:
               121-471
               

               Cow position:
               chr6:40319681-40320035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               121-474
               

               Cow position:
               chr6:64314750-64314405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               329, 20
               

               Conread position:
               121-476
               

               Cow position:
               chr6:15137747-15137393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-476
               

               Cow position:
               chr6:35416548-35416205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               253
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               88, 37
               

               Conread position:
               121-490
               

               Cow position:
               chr6:28476445-28476811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               121-490
               

               Cow position:
               chr6:38988398-38988031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               121-491
               

               Cow position:
               chr6:24623716-24623351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               121-492
               

               Cow position:
               chr6:54358098-54357734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 43
               

               Conread position:
               121-493
               

               Cow position:
               chr6:20451385-20451753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-495
               

               Cow position:
               chr6:12388036-12387676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-496
               

               Cow position:
               chr6:41816220-41815861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 24
               

               Conread position:
               121-497
               

               Cow position:
               chr6:16410480-16410849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 70
               

               Conread position:
               121-500
               

               Cow position:
               chr6:11442544-11442168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 27
               

               Conread position:
               121-501
               

               Cow position:
               chr6:706424-706799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:1817586-1817210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 28
               

               Conread position:
               121-501
               

               Cow position:
               chr6:3272056-3271676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 43
               

               Conread position:
               121-501
               

               Cow position:
               chr6:3445387-3445012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:6182300-6181921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 78
               

               Conread position:
               121-501
               

               Cow position:
               chr6:6200756-6201133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 66
               

               Conread position:
               121-501
               

               Cow position:
               chr6:7175226-7174844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               28, 50
               

               Conread position:
               121-501
               

               Cow position:
               chr6:8205613-8205992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:8754029-8753653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:13494667-13494288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 39
               

               Conread position:
               121-501
               

               Cow position:
               chr6:14950230-14949855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 26
               

               Conread position:
               121-501
               

               Cow position:
               chr6:21832234-21831855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 73
               

               Conread position:
               121-501
               

               Cow position:
               chr6:24125977-24125616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:24242713-24243090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:34494101-34494473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 26
               

               Conread position:
               121-501
               

               Cow position:
               chr6:39331107-39330727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:40358453-40358072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 65
               

               Conread position:
               121-501
               

               Cow position:
               chr6:40550274-40549896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               121-501
               

               Cow position:
               chr6:40975594-40975968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               121-501
               

               Cow position:
               chr6:41192773-41193152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 44
               

               Conread position:
               121-501
               

               Cow position:
               chr6:42267147-42267521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 24
               

               Conread position:
               121-501
               

               Cow position:
               chr6:43789942-43789565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:47039785-47039406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:51733507-51733886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-501
               

               Cow position:
               chr6:55538845-55538468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 35
               

               Conread position:
               121-501
               

               Cow position:
               chr6:55903515-55903888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 38
               

               Conread position:
               121-501
               

               Cow position:
               chr6:56842448-56842815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               121-502
               

               Cow position:
               chr6:40139859-40139490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               19, 38
               

               Conread position:
               121-502
               

               Cow position:
               chr6:65930652-65931027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               28, 38
               

               Conread position:
               121-506
               

               Cow position:
               chr6:15480986-15481365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 20
               

               Conread position:
               121-506
               

               Cow position:
               chr6:60876722-60877105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 38
               

               Conread position:
               121-512
               

               Cow position:
               chr6:3886079-3885691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-523
               

               Cow position:
               chr6:28156844-28156447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 56
               

               Conread position:
               121-525
               

               Cow position:
               chr6:15783566-15783162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               121-528
               

               Cow position:
               chr6:1077835-1077429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 73
               

               Conread position:
               121-528
               

               Cow position:
               chr6:27365597-27365999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 15
               

               Conread position:
               121-528
               

               Cow position:
               chr6:47381109-47381501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 68
               

               Conread position:
               121-534
               

               Cow position:
               chr6:30076850-30076436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 72
               

               Conread position:
               121-547
               

               Cow position:
               chr6:828401-827987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 20
               

               Conread position:
               121-547
               

               Cow position:
               chr6:24583976-24583544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               121-557
               

               Cow position:
               chr6:208429-208852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 27
               

               Conread position:
               121-579
               

               Cow position:
               chr6:55386882-55387325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 34
               

               Conread position:
               122-393
               

               Cow position:
               chr6:15923931-15923664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 37
               

               Conread position:
               122-427
               

               Cow position:
               chr6:1245489-1245191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               122-467
               

               Cow position:
               chr6:8777381-8777719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 67
               

               Conread position:
               122-491
               

               Cow position:
               chr6:56858685-56859040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               262
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               8, 68
               

               Conread position:
               122-501
               

               Cow position:
               chr6:539564-539941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 59
               

               Conread position:
               123-492
               

               Cow position:
               chr6:51674194-51674556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 65
               

               Conread position:
               123-502
               

               Cow position:
               chr6:12738866-12739247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 43
               

               Conread position:
               123-524
               

               Cow position:
               chr6:17932360-17932755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               11, 19
               

               Conread position:
               124-343
               

               Cow position:
               chr6:31150896-31151115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 41
               

               Conread position:
               124-365
               

               Cow position:
               chr6:66839795-66840032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               167, 17
               

               Conread position:
               124-395
               

               Cow position:
               chr6:39301684-39301416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 7
               

               Conread position:
               124-425
               

               Cow position:
               chr6:17284774-17284478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               124-448
               

               Cow position:
               chr6:42945110-42945412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               225, 23
               

               Conread position:
               124-452
               

               Cow position:
               chr6:126706-126379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-464
               

               Cow position:
               chr6:65847942-65847604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               124-465
               

               Cow position:
               chr6:43054050-43053718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               124-477
               

               Cow position:
               chr6:57967383-57967745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               124-488
               

               Cow position:
               chr6:26324771-26324409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-488
               

               Cow position:
               chr6:37217068-37217431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-490
               

               Cow position:
               chr6:29484407-29484756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               324, 23
               

               Conread position:
               124-492
               

               Cow position:
               chr6:6471491-6471124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 13
               

               Conread position:
               124-494
               

               Cow position:
               chr6:1887362-1886999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               124-494
               

               Cow position:
               chr6:16185835-16186195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               226, 23
               

               Conread position:
               124-496
               

               Cow position:
               chr6:57473690-57474047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               259
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               325, 23
               

               Conread position:
               124-501
               

               Cow position:
               chr6:10695150-10695515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 51
               

               Conread position:
               124-501
               

               Cow position:
               chr6:11020087-11020463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-501
               

               Cow position:
               chr6:17111737-17111361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:17121818-17122194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:26829956-26830332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:38873099-38872723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:40813790-40814166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:41158892-41158516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-501
               

               Cow position:
               chr6:41495408-41495033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-501
               

               Cow position:
               chr6:41868544-41868164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               11, 77
               

               Conread position:
               124-501
               

               Cow position:
               chr6:44017399-44017018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-501
               

               Cow position:
               chr6:46570404-46570781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 67
               

               Conread position:
               124-501
               

               Cow position:
               chr6:53461739-53461367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 34
               

               Conread position:
               124-501
               

               Cow position:
               chr6:57521604-57521980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-501
               

               Cow position:
               chr6:60379592-60379968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 36
               

               Conread position:
               124-501
               

               Cow position:
               chr6:61051694-61051318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-502
               

               Cow position:
               chr6:478979-479352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 23
               

               Conread position:
               124-502
               

               Cow position:
               chr6:10044635-10045012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               124-502
               

               Cow position:
               chr6:50685530-50685168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               124-505
               

               Cow position:
               chr6:12506281-12505921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               33, 17
               

               Conread position:
               124-506
               

               Cow position:
               chr6:7755514-7755149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               124-506
               

               Cow position:
               chr6:53212022-53211667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               25, 65
               

               Conread position:
               124-506
               

               Cow position:
               chr6:65011592-65011956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               12, 64
               

               Conread position:
               124-508
               

               Cow position:
               chr6:1734232-1733853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 64
               

               Conread position:
               124-513
               

               Cow position:
               chr6:35743549-35743931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               262
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               13, 42
               

               Conread position:
               124-524
               

               Cow position:
               chr6:48327642-48328033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 21
               

               Conread position:
               124-525
               

               Cow position:
               chr6:2366846-2366466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 34
               

               Conread position:
               124-528
               

               Cow position:
               chr6:55456646-55456246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 40
               

               Conread position:
               124-531
               

               Cow position:
               chr6:3928563-3928957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               124-531
               

               Cow position:
               chr6:29084955-29084564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 17
               

               Conread position:
               124-534
               

               Cow position:
               chr6:8145598-8145194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 66
               

               Conread position:
               124-539
               

               Cow position:
               chr6:52189560-52189157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 30
               

               Conread position:
               124-592
               

               Cow position:
               chr6:61055970-61055488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               331
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               125-305
               

               Cow position:
               chr6:42761240-42761067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-309
               

               Cow position:
               chr6:16699566-16699745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               125-324
               

               Cow position:
               chr6:48882178-48882370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-333
               

               Cow position:
               chr6:8382374-8382575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-341
               

               Cow position:
               chr6:17386958-17387167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-345
               

               Cow position:
               chr6:12647614-12647827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               125-351
               

               Cow position:
               chr6:65943326-65943545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-390
               

               Cow position:
               chr6:25436331-25436073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               194
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-391
               

               Cow position:
               chr6:28980110-28979850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               125-391
               

               Cow position:
               chr6:55361360-55361101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-395
               

               Cow position:
               chr6:33808999-33808736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 11
               

               Conread position:
               125-399
               

               Cow position:
               chr6:54979094-54978827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-408
               

               Cow position:
               chr6:42897622-42897901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               103, 11
               

               Conread position:
               125-409
               

               Cow position:
               chr6:53930154-53929874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               12, 64
               

               Conread position:
               125-421
               

               Cow position:
               chr6:63177478-63177767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-424
               

               Cow position:
               chr6:7112285-7111988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               213
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               125-453
               

               Cow position:
               chr6:37387996-37388323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 35
               

               Conread position:
               125-460
               

               Cow position:
               chr6:13307963-13307634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-465
               

               Cow position:
               chr6:62333318-62332982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               39, 63
               

               Conread position:
               125-470
               

               Cow position:
               chr6:888992-889329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-475
               

               Cow position:
               chr6:45479653-45479309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-484
               

               Cow position:
               chr6:57329713-57330066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 11
               

               Conread position:
               125-491
               

               Cow position:
               chr6:23568158-23567813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               252
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-499
               

               Cow position:
               chr6:28701131-28700762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-499
               

               Cow position:
               chr6:33466387-33466757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 35
               

               Conread position:
               125-500
               

               Cow position:
               chr6:15991516-15991146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               257
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               12, 66
               

               Conread position:
               125-500
               

               Cow position:
               chr6:39848345-39848710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:77006-76637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-501
               

               Cow position:
               chr6:444493-444123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:1637527-1637152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 63
               

               Conread position:
               125-501
               

               Cow position:
               chr6:9234946-9235317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:10598422-10598784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 16
               

               Conread position:
               125-501
               

               Cow position:
               chr6:11169005-11169363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               92, 33
               

               Conread position:
               125-501
               

               Cow position:
               chr6:11389184-11388809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               125-501
               

               Cow position:
               chr6:11401755-11402125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:12971831-12972201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:17632335-17631965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               301, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:19103473-19103102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:19706863-19707234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:20215961-20215591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:20581341-20580974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:21163738-21164108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:22737271-22736901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:23879629-23879254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               125-501
               

               Cow position:
               chr6:26667595-26667219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               125-501
               

               Cow position:
               chr6:26697645-26697259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               125-501
               

               Cow position:
               chr6:26771692-26771317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               125-501
               

               Cow position:
               chr6:28065420-28065792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 63
               

               Conread position:
               125-501
               

               Cow position:
               chr6:28184885-28184516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:30704810-30705180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:34017287-34016918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:34476320-34475953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 16
               

               Conread position:
               125-501
               

               Cow position:
               chr6:34504091-34503720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 22
               

               Conread position:
               125-501
               

               Cow position:
               chr6:36258389-36258759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:38917605-38917234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:39080352-39080722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:39897628-39897258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:40278481-40278857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 63
               

               Conread position:
               125-501
               

               Cow position:
               chr6:41823402-41823032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:44598621-44598246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 63
               

               Conread position:
               125-501
               

               Cow position:
               chr6:45666500-45666135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               251
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               303, 22
               

               Conread position:
               125-501
               

               Cow position:
               chr6:45937714-45938084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:45975934-45976304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:46608072-46607704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-501
               

               Cow position:
               chr6:51877184-51877560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 64
               

               Conread position:
               125-501
               

               Cow position:
               chr6:53739721-53740096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 130
               

               Conread position:
               125-501
               

               Cow position:
               chr6:54900524-54900894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:56557177-56556807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:57308654-57309026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 69
               

               Conread position:
               125-501
               

               Cow position:
               chr6:59051853-59052223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:61549293-61548922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 9
               

               Conread position:
               125-501
               

               Cow position:
               chr6:62665210-62665581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:63714841-63714484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-501
               

               Cow position:
               chr6:67553667-67554035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               125-502
               

               Cow position:
               chr6:16049863-16049490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               125-502
               

               Cow position:
               chr6:55169903-55170269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               125-507
               

               Cow position:
               chr6:51869372-51869749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-519
               

               Cow position:
               chr6:19145660-19145285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               32, 70
               

               Conread position:
               125-525
               

               Cow position:
               chr6:38797576-38797970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 8
               

               Conread position:
               125-526
               

               Cow position:
               chr6:16297926-16298331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               125-528
               

               Cow position:
               chr6:62788455-62788833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               324, 22
               

               Conread position:
               125-572
               

               Cow position:
               chr6:53537511-53537952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 11
               

               Conread position:
               125-646
               

               Cow position:
               chr6:4505707-4506225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               10, 34
               

               Conread position:
               126-342
               

               Cow position:
               chr6:3987620-3987409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               193, 10
               

               Conread position:
               126-422
               

               Cow position:
               chr6:42988364-42988078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               12, 63
               

               Conread position:
               126-471
               

               Cow position:
               chr6:17602974-17602637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               17, 33
               

               Conread position:
               126-488
               

               Cow position:
               chr6:17887603-17887245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               21, 34
               

               Conread position:
               126-501
               

               Cow position:
               chr6:27887358-27887726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               126-501
               

               Cow position:
               chr6:60456111-60456486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 27
               

               Conread position:
               126-526
               

               Cow position:
               chr6:65858924-65858530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 213
               

               Conread position:
               126-528
               

               Cow position:
               chr6:2411917-2412306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               21, 8
               

               Conread position:
               126-528
               

               Cow position:
               chr6:17456172-17456550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               316, 19
               

               Conread position:
               126-528
               

               Cow position:
               chr6:44869868-44869480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               324, 37
               

               Conread position:
               126-531
               

               Cow position:
               chr6:7049425-7049810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               233, 8
               

               Conread position:
               126-550
               

               Cow position:
               chr6:14290083-14289674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               127-501
               

               Cow position:
               chr6:2606896-2607269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 20
               

               Conread position:
               128-501
               

               Cow position:
               chr6:327930-327558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 60
               

               Conread position:
               128-501
               

               Cow position:
               chr6:2875601-2875231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 60
               

               Conread position:
               128-501
               

               Cow position:
               chr6:19719002-19719375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 49
               

               Conread position:
               128-501
               

               Cow position:
               chr6:49444547-49444923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 59
               

               Conread position:
               128-506
               

               Cow position:
               chr6:22995700-22995323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               74, 8
               

               Conread position:
               128-508
               

               Cow position:
               chr6:66234776-66235151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               21, 60
               

               Conread position:
               129-501
               

               Cow position:
               chr6:4468055-4468415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 59
               

               Conread position:
               129-502
               

               Cow position:
               chr6:44146514-44146145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 58
               

               Conread position:
               130-425
               

               Cow position:
               chr6:60813994-60813706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               130-476
               

               Cow position:
               chr6:47383023-47383365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 15
               

               Conread position:
               130-496
               

               Cow position:
               chr6:33949726-33949366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 33
               

               Conread position:
               130-501
               

               Cow position:
               chr6:65921317-65920954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               130-527
               

               Cow position:
               chr6:29430269-29430660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               130-529
               

               Cow position:
               chr6:57303031-57303417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               130-543
               

               Cow position:
               chr6:12306985-12307379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 57
               

               Conread position:
               131-344
               

               Cow position:
               chr6:34273428-34273223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               131-372
               

               Cow position:
               chr6:48947209-48946977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               13, 33
               

               Conread position:
               131-448
               

               Cow position:
               chr6:59596689-59597006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               18, 28
               

               Conread position:
               131-458
               

               Cow position:
               chr6:53672776-53673103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 27
               

               Conread position:
               131-465
               

               Cow position:
               chr6:14199481-14199811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               233
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               131-501
               

               Cow position:
               chr6:46633549-46633918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 27
               

               Conread position:
               131-506
               

               Cow position:
               chr6:24045113-24044749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               317, 5
               

               Conread position:
               131-528
               

               Cow position:
               chr6:33359089-33359476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               131-534
               

               Cow position:
               chr6:10570472-10570070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 29
               

               Conread position:
               132-501
               

               Cow position:
               chr6:33884643-33884278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 15
               

               Conread position:
               132-522
               

               Cow position:
               chr6:22017738-22017356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 55
               

               Conread position:
               134-317
               

               Cow position:
               chr6:1402121-1401944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               134-471
               

               Cow position:
               chr6:68030887-68031221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 11
               

               Conread position:
               134-488
               

               Cow position:
               chr6:6568792-6568442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:451821-451459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:1406709-1406348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:11453425-11453062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:21712148-21712511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:22043567-22043205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:25374666-25374303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:27173283-27173646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:28000954-28000592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:28160851-28161211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               134-501
               

               Cow position:
               chr6:28401087-28401448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               311, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:28487219-28486856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:33921956-33921598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:42481323-42481686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:43621461-43621824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:45723683-45723319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:45901551-45901188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:47539821-47540180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 13
               

               Conread position:
               134-501
               

               Cow position:
               chr6:49579548-49579902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 11
               

               Conread position:
               134-501
               

               Cow position:
               chr6:59834526-59834883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 12
               

               Conread position:
               134-540
               

               Cow position:
               chr6:10536537-10536135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 11
               

               Conread position:
               135-416
               

               Cow position:
               chr6:34843249-34842965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 23
               

               Conread position:
               135-501
               

               Cow position:
               chr6:43049456-43049816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 10
               

               Conread position:
               136-324
               

               Cow position:
               chr6:17773190-17773006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               136-462
               

               Cow position:
               chr6:24966086-24965773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               257, 9
               

               Conread position:
               136-468
               

               Cow position:
               chr6:34030702-34031016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               314, 12
               

               Conread position:
               136-487
               

               Cow position:
               chr6:45161087-45160744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 16
               

               Conread position:
               136-492
               

               Cow position:
               chr6:24631814-24631457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 22
               

               Conread position:
               136-497
               

               Cow position:
               chr6:17344644-17344996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               136-501
               

               Cow position:
               chr6:4681053-4681405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 9
               

               Conread position:
               136-501
               

               Cow position:
               chr6:6160039-6160379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 31
               

               Conread position:
               136-501
               

               Cow position:
               chr6:7137897-7137537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               301, 11
               

               Conread position:
               136-501
               

               Cow position:
               chr6:9737821-9737459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 16
               

               Conread position:
               136-501
               

               Cow position:
               chr6:12997864-12998221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 9
               

               Conread position:
               136-501
               

               Cow position:
               chr6:27094142-27093782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 9
               

               Conread position:
               136-501
               

               Cow position:
               chr6:28674973-28675333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 11
               

               Conread position:
               136-501
               

               Cow position:
               chr6:48568046-48567690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               136-501
               

               Cow position:
               chr6:53811022-53811373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               256
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               142, 9
               

               Conread position:
               136-506
               

               Cow position:
               chr6:48248577-48248947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               242
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               233, 51
               

               Conread position:
               136-525
               

               Cow position:
               chr6:4021962-4022356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 11
               

               Conread position:
               137-322
               

               Cow position:
               chr6:31530034-31530218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               69, 10
               

               Conread position:
               137-501
               

               Cow position:
               chr6:19712801-19712440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 21
               

               Conread position:
               137-525
               

               Cow position:
               chr6:9751751-9751372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               246, 20
               

               Conread position:
               137-531
               

               Cow position:
               chr6:9368786-9368386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               282
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               69, 21
               

               Conread position:
               137-544
               

               Cow position:
               chr6:12406666-12407055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 51
               

               Conread position:
               138-433
               

               Cow position:
               chr6:47441700-47441415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               28, 51
               

               Conread position:
               138-493
               

               Cow position:
               chr6:63094101-63094454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 49
               

               Conread position:
               138-500
               

               Cow position:
               chr6:47317192-47317549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               308, 38
               

               Conread position:
               138-501
               

               Cow position:
               chr6:32211323-32210971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 20
               

               Conread position:
               139-501
               

               Cow position:
               chr6:65016595-65016233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 19
               

               Conread position:
               140-502
               

               Cow position:
               chr6:28342949-28343307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 47
               

               Conread position:
               140-531
               

               Cow position:
               chr6:10425715-10426106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 27
               

               Conread position:
               141-386
               

               Cow position:
               chr6:6100703-6100461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               243, 17
               

               Conread position:
               141-465
               

               Cow position:
               chr6:50503029-50503341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 46
               

               Conread position:
               141-501
               

               Cow position:
               chr6:224050-223694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 16
               

               Conread position:
               141-501
               

               Cow position:
               chr6:34075316-34075681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 46
               

               Conread position:
               141-507
               

               Cow position:
               chr6:31304458-31304820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               150, 17
               

               Conread position:
               142-448
               

               Cow position:
               chr6:44510539-44510843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 16
               

               Conread position:
               142-501
               

               Cow position:
               chr6:54865895-54865540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               145-501
               

               Cow position:
               chr6:41834753-41835105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 13
               

               Conread position:
               145-501
               

               Cow position:
               chr6:43921088-43921441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 13
               

               Conread position:
               145-501
               

               Cow position:
               chr6:45747556-45747202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 13
               

               Conread position:
               145-532
               

               Cow position:
               chr6:14148032-14148418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 12
               

               Conread position:
               147-305
               

               Cow position:
               chr6:35122219-35122072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               147-424
               

               Cow position:
               chr6:2110954-2110688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               147-468
               

               Cow position:
               chr6:6119549-6119232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 40
               

               Conread position:
               147-490
               

               Cow position:
               chr6:33451281-33451615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               68, 11
               

               Conread position:
               147-501
               

               Cow position:
               chr6:42420573-42420923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 10
               

               Conread position:
               147-526
               

               Cow position:
               chr6:9468986-9469341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 16
               

               Conread position:
               149-281
               

               Cow position:
               chr6:18474473-18474602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               149-489
               

               Cow position:
               chr6:10486910-10487242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               209, 15
               

               Conread position:
               150-509
               

               Cow position:
               chr6:48473139-48473485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               107, 40
               

               Conread position:
               151-501
               

               Cow position:
               chr6:27541018-27541366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               151-501
               

               Cow position:
               chr6:46666415-46666762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 26
               

               Conread position:
               154-502
               

               Cow position:
               chr6:41556771-41557134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               61, 31
               

               Conread position:
               155-324
               

               Cow position:
               chr6:30316474-30316303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               155-500
               

               Cow position:
               chr6:39109906-39109574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               279, 27
               

               Conread position:
               155-506
               

               Cow position:
               chr6:33017601-33017242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               51, 31
               

               Conread position:
               155-513
               

               Cow position:
               chr6:56636000-56635650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               66, 32
               

               Conread position:
               155-532
               

               Cow position:
               chr6:65903148-65902767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               251
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               63, 38
               

               Conread position:
               155-638
               

               Cow position:
               chr6:57681068-57680592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               327
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               168, 32
               

               Conread position:
               156-424
               

               Cow position:
               chr6:64304888-64304618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               65, 18
               

               Conread position:
               156-463
               

               Cow position:
               chr6:58951028-58950719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               12, 32
               

               Conread position:
               156-500
               

               Cow position:
               chr6:6120968-6120635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               11, 18
               

               Conread position:
               156-506
               

               Cow position:
               chr6:48343311-48343655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               252
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               157-344
               

               Cow position:
               chr6:22663614-22663439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               69, 30
               

               Conread position:
               157-401
               

               Cow position:
               chr6:54429144-54429388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               158-323
               

               Cow position:
               chr6:34386755-34386593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               158-334
               

               Cow position:
               chr6:62828850-62828684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               158-367
               

               Cow position:
               chr6:10650342-10650139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               158-492
               

               Cow position:
               chr6:16625254-16625587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 29
               

               Conread position:
               158-492
               

               Cow position:
               chr6:39093079-39093409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               79, 29
               

               Conread position:
               158-493
               

               Cow position:
               chr6:1263630-1263955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               87, 29
               

               Conread position:
               158-494
               

               Cow position:
               chr6:37761703-37762040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 29
               

               Conread position:
               158-496
               

               Cow position:
               chr6:1835886-1836215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 29
               

               Conread position:
               158-496
               

               Cow position:
               chr6:20328819-20329157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 22
               

               Conread position:
               158-500
               

               Cow position:
               chr6:29239028-29239362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               201, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:6613750-6614090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:10266664-10266330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               160, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:12662858-12662525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:17556707-17557030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               158-501
               

               Cow position:
               chr6:28136202-28136543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:63252594-63252244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               158-501
               

               Cow position:
               chr6:67187017-67187352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               53, 25
               

               Conread position:
               158-502
               

               Cow position:
               chr6:46391018-46391351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 29
               

               Conread position:
               158-502
               

               Cow position:
               chr6:65909789-65910131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 29
               

               Conread position:
               158-504
               

               Cow position:
               chr6:33296714-33297051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 29
               

               Conread position:
               158-505
               

               Cow position:
               chr6:21584446-21584107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               238
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               292, 34
               

               Conread position:
               158-506
               

               Cow position:
               chr6:1090360-1090019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               292, 101
               

               Conread position:
               158-506
               

               Cow position:
               chr6:64888420-64888755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               158-512
               

               Cow position:
               chr6:50446589-50446240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 29
               

               Conread position:
               158-526
               

               Cow position:
               chr6:44098149-44098511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               195, 9
               

               Conread position:
               158-531
               

               Cow position:
               chr6:35725401-35725771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 29
               

               Conread position:
               158-536
               

               Cow position:
               chr6:55944974-55944603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 29
               

               Conread position:
               159-500
               

               Cow position:
               chr6:46162198-46161870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               162, 28
               

               Conread position:
               159-501
               

               Cow position:
               chr6:9733514-9733176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               243
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               159-506
               

               Cow position:
               chr6:26614518-26614870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               148, 26
               
UCSC Genome Browser
               Conread position:
               159-510
               

               Cow position:
               chr6:38915057-38915401 (view  custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               47, 28
               
UCSC Genome Browser
               
               
               
Conread position: 159-514

               
               
               
Cow position: chr6:35710715-35711064 (view  custom track)

               
               
               
Alignm length: 358

               
               
               
Alignm identity: 231

               
               
               
Alignm E-value: 1e-32

               
               
               
Alignm gaps (pig, cow): 180, 28
UCSC Genome Browser
               
               
               
Conread position: 160-491

               
               
               
Cow position: chr6:2582084-2582410 (view  custom track)

               
               
               
Alignm length: 339

               
               
               
Alignm identity: 248

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 283, 27

               
               
               Conread position:160-499
               
               
               Cow position:chr6:35704068-35703735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:160-525
               
               
               Cow position:chr6:14851287-14850932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:161-424
               
               
               Cow position:chr6:57552091-57551830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:161-474
               
               
               Cow position:chr6:37643889-37644194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):288, 26

               
               
               Conread position:163-425
               
               
               Cow position:chr6:6944509-6944250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:163-457
               
               
               Cow position:chr6:14689987-14690277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):284, 24

               
               
               Conread position:163-528
               
               
               Cow position:chr6:6079581-6079229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:164-415
               
               
               Cow position:chr6:9036422-9036172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:165-525
               
               
               Cow position:chr6:36918837-36918494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 22

               
               
               Conread position:165-536
               
               
               Cow position:chr6:50637731-50638098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:166-525
               
               
               Cow position:chr6:40137933-40137576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 21

               
               
               Conread position:167-384
               
               
               Cow position:chr6:17334232-17334446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):182, 20

               
               
               Conread position:167-501
               
               
               Cow position:chr6:19044662-19044994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 20

               
               
               Conread position:172-392
               
               
               Cow position:chr6:62921897-62921681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):204, 15

               
               
               Conread position:172-524
               
               
               Cow position:chr6:50801089-50800739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 14

               
               
               Conread position:175-501
               
               
               Cow position:chr6:65862015-65862341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 150

               
               
               Conread position:177-457
               
               
               Cow position:chr6:14707410-14707128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:182-391
               
               
               Cow position:chr6:55361090-55360881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-500
               
               
               Cow position:chr6:45618093-45617791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 177

               
               
               Conread position:186-513
               
               
               Cow position:chr6:12678561-12678885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):178, 92

               
               
               Conread position:187-497
               
               
               Cow position:chr6:4903306-4902996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:188-506
               
               
               Cow position:chr6:47340009-47339703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:189-528
               
               
               Cow position:chr6:19115268-19115604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:190-501
               
               
               Cow position:chr6:28164016-28164328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 154

               
               
               Conread position:190-501
               
               
               Cow position:chr6:56887901-56888217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:190-524
               
               
               Cow position:chr6:28080588-28080266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:190-539
               
               
               Cow position:chr6:14932365-14932033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:191-568
               
               
               Cow position:chr6:35434930-35435313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:192-455
               
               
               Cow position:chr6:40760520-40760788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:192-487
               
               
               Cow position:chr6:12680513-12680810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:192-502
               
               
               Cow position:chr6:15182230-15182544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:192-502
               
               
               Cow position:chr6:27526510-27526199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:192-528
               
               
               Cow position:chr6:28053189-28052860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):200, 34

               
               
               Conread position:192-547
               
               
               Cow position:chr6:54293479-54293832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:193-442
               
               
               Cow position:chr6:57119803-57120057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:193-501
               
               
               Cow position:chr6:2867968-2867655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:193-501
               
               
               Cow position:chr6:14389234-14388921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:193-501
               
               
               Cow position:chr6:30708705-30708392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:193-501
               
               
               Cow position:chr6:43087123-43086810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 283

               
               
               Conread position:193-501
               
               
               Cow position:chr6:49794449-49794763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:193-506
               
               
               Cow position:chr6:65844547-65844866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:193-525
               
               
               Cow position:chr6:3544986-3545322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:193-550
               
               
               Cow position:chr6:42565031-42565380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:193-589
               
               
               Cow position:chr6:1104666-1104266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):27, 244

               
               
               Conread position:194-355
               
               
               Cow position:chr6:46676581-46676417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:195-501
               
               
               Cow position:chr6:58390524-58390219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):231, 175

               
               
               Conread position:196-463
               
               
               Cow position:chr6:18874669-18874941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:196-550
               
               
               Cow position:chr6:12518576-12518928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:197-465
               
               
               Cow position:chr6:35104044-35103774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 152

               
               
               Conread position:197-525
               
               
               Cow position:chr6:55141338-55141006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:198-445
               
               
               Cow position:chr6:30896301-30896549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 159

               
               
               Conread position:198-499
               
               
               Cow position:chr6:35614063-35613756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:198-501
               
               
               Cow position:chr6:43039409-43039717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:198-503
               
               
               Cow position:chr6:47171541-47171850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 237

               
               
               Conread position:198-511
               
               
               Cow position:chr6:52120589-52120897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:198-525
               
               
               Cow position:chr6:52401139-52401468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 222

               
               
               Conread position:198-542
               
               
               Cow position:chr6:16675176-16675514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:198-577
               
               
               Cow position:chr6:15181625-15182003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 233

               
               
               Conread position:198-592
               
               
               Cow position:chr6:15962445-15962047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:199-501
               
               
               Cow position:chr6:22332993-22332691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 102

               
               
               Conread position:200-457
               
               
               Cow position:chr6:7995546-7995287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:200-488
               
               
               Cow position:chr6:8207729-8208018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:200-490
               
               
               Cow position:chr6:36830535-36830826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:200-491
               
               
               Cow position:chr6:26914458-26914743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:200-497
               
               
               Cow position:chr6:25358432-25358728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 65

               
               
               Conread position:200-500
               
               
               Cow position:chr6:31532771-31532483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:200-500
               
               
               Cow position:chr6:51970511-51970212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):248, 125

               
               
               Conread position:200-501
               
               
               Cow position:chr6:48054-47750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):199, 173

               
               
               Conread position:200-501
               
               
               Cow position:chr6:8284271-8283972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:200-501
               
               
               Cow position:chr6:8562080-8562371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):149, 158

               
               
               Conread position:200-501
               
               
               Cow position:chr6:29298720-29299021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 152

               
               
               Conread position:200-501
               
               
               Cow position:chr6:32664933-32665235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:200-502
               
               
               Cow position:chr6:66550061-66550363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 239

               
               
               Conread position:200-522
               
               
               Cow position:chr6:34236289-34235982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):246, 24

               
               
               Conread position:200-531
               
               
               Cow position:chr6:28141556-28141876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:200-535
               
               
               Cow position:chr6:1913996-1914316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):250, 70

               
               
               Conread position:200-550
               
               
               Cow position:chr6:13405838-13406183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 119

               
               
               Conread position:201-497
               
               
               Cow position:chr6:12535184-12535473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):165, 47

               
               
               Conread position:203-425
               
               
               Cow position:chr6:16191126-16191348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:204-497
               
               
               Cow position:chr6:16626222-16626515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):72, 252

               
               
               Conread position:204-524
               
               
               Cow position:chr6:48807628-48807316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):173, 151

               
               
               Conread position:204-531
               
               
               Cow position:chr6:64815664-64815344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:204-532
               
               
               Cow position:chr6:41051957-41052284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):245, 115

               
               
               Conread position:205-532
               
               
               Cow position:chr6:5501435-5501110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 77

               
               
               Conread position:207-424
               
               
               Cow position:chr6:40284454-40284235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:207-426
               
               
               Cow position:chr6:38995215-38994995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 188

               
               
               Conread position:207-501
               
               
               Cow position:chr6:8432400-8432694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):115, 219

               
               
               Conread position:207-501
               
               
               Cow position:chr6:50114211-50114501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):203, 53

               
               
               Conread position:207-501
               
               
               Cow position:chr6:53345158-53345451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:207-502
               
               
               Cow position:chr6:21312396-21312099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 164

               
               
               Conread position:207-506
               
               
               Cow position:chr6:61066441-61066741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:207-509
               
               
               Cow position:chr6:41876690-41876388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):221, 74

               
               
               Conread position:208-501
               
               
               Cow position:chr6:50120422-50120131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:209-532
               
               
               Cow position:chr6:39416686-39417020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):157, 76

               
               
               Conread position:211-502
               
               
               Cow position:chr6:64571639-64571921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 117

               
               
               Conread position:212-501
               
               
               Cow position:chr6:10332743-10332453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 0

               
               
               Conread position:212-532
               
               
               Cow position:chr6:38595133-38594808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):238, 172

               
               
               Conread position:213-496
               
               
               Cow position:chr6:65891562-65891284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):213, 69

               
               
               Conread position:214-351
               
               
               Cow position:chr6:11788180-11788317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-408
               
               
               Cow position:chr6:56849030-56849224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 153

               
               
               Conread position:214-473
               
               
               Cow position:chr6:54321192-54320934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:214-490
               
               
               Cow position:chr6:19684450-19684173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:214-491
               
               
               Cow position:chr6:54218038-54218313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 116

               
               
               Conread position:214-500
               
               
               Cow position:chr6:28101168-28100880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:214-501
               
               
               Cow position:chr6:6768654-6768932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:214-501
               
               
               Cow position:chr6:44131336-44131048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:214-502
               
               
               Cow position:chr6:3095600-3095300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:214-523
               
               
               Cow position:chr6:54079639-54079937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):234, 45

               
               
               Conread position:214-534
               
               
               Cow position:chr6:31979221-31978906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 160

               
               
               Conread position:215-501
               
               
               Cow position:chr6:24075182-24074902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):231, 60

               
               
               Conread position:215-501
               
               
               Cow position:chr6:54887097-54886810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:215-527
               
               
               Cow position:chr6:4698823-4698500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:215-535
               
               
               Cow position:chr6:45279783-45279465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 36

               
               
               Conread position:217-472
               
               
               Cow position:chr6:42617002-42617256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 34

               
               
               Conread position:217-474
               
               
               Cow position:chr6:52249013-52248757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):217, 169

               
               
               Conread position:217-490
               
               
               Cow position:chr6:1279136-1278866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:217-492
               
               
               Cow position:chr6:28482185-28482462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 213

               
               
               Conread position:217-502
               
               
               Cow position:chr6:42131456-42131171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 107

               
               
               Conread position:217-509
               
               
               Cow position:chr6:32121267-32121561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 165

               
               
               Conread position:219-395
               
               
               Cow position:chr6:20055699-20055870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:219-447
               
               
               Cow position:chr6:24545127-24545364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:219-501
               
               
               Cow position:chr6:46813660-46813937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:220-534
               
               
               Cow position:chr6:3725112-3725413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:222-501
               
               
               Cow position:chr6:25375783-25376063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:223-501
               
               
               Cow position:chr6:31549052-31548774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 134

               
               
               Conread position:223-528
               
               
               Cow position:chr6:17326901-17326602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 104

               
               
               Conread position:224-448
               
               
               Cow position:chr6:16220653-16220435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:224-456
               
               
               Cow position:chr6:41437396-41437629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:224-461
               
               
               Cow position:chr6:43585634-43585863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):226, 103

               
               
               Conread position:224-470
               
               
               Cow position:chr6:39978766-39979011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):211, 204

               
               
               Conread position:224-501
               
               
               Cow position:chr6:15986957-15987234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):222, 269

               
               
               Conread position:224-501
               
               
               Cow position:chr6:35181867-35181591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 182

               
               
               Conread position:224-501
               
               
               Cow position:chr6:52481872-52482150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:224-504
               
               
               Cow position:chr6:7801983-7801705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 0

               
               
               Conread position:225-491
               
               
               Cow position:chr6:875966-875706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):221, 183

               
               
               Conread position:225-492
               
               
               Cow position:chr6:10176974-10176707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 89

               
               
               Conread position:225-506
               
               
               Cow position:chr6:19517864-19517585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):206, 105

               
               
               Conread position:225-525
               
               
               Cow position:chr6:31689008-31688707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:226-496
               
               
               Cow position:chr6:6817145-6817398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:227-448
               
               
               Cow position:chr6:4865153-4864934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 62

               
               
               Conread position:227-526
               
               
               Cow position:chr6:30470834-30470546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:228-501
               
               
               Cow position:chr6:25774092-25773822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):137, 15

               
               
               Conread position:228-504
               
               
               Cow position:chr6:16766010-16765734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):222, 183

               
               
               Conread position:228-506
               
               
               Cow position:chr6:29503419-29503696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):228, 9

               
               
               Conread position:229-492
               
               
               Cow position:chr6:7191093-7190826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:229-532
               
               
               Cow position:chr6:40300479-40300179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):266, 53

               
               
               Conread position:230-487
               
               
               Cow position:chr6:22011217-22010968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):206, 95

               
               
               Conread position:230-493
               
               
               Cow position:chr6:6569218-6569481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:230-501
               
               
               Cow position:chr6:2390144-2389872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:232-501
               
               
               Cow position:chr6:55289633-55289365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 142

               
               
               Conread position:233-501
               
               
               Cow position:chr6:10013333-10013602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:233-501
               
               
               Cow position:chr6:12622865-12623126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):217, 36

               
               
               Conread position:233-501
               
               
               Cow position:chr6:25363087-25363356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:233-501
               
               
               Cow position:chr6:49442506-49442761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:233-541
               
               
               Cow position:chr6:6340537-6340847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:234-506
               
               
               Cow position:chr6:3449942-3449675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:236-504
               
               
               Cow position:chr6:67950320-67950587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:236-531
               
               
               Cow position:chr6:50625003-50625291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):241, 92

               
               
               Conread position:237-468
               
               
               Cow position:chr6:64253211-64253441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):209, 120

               
               
               Conread position:237-483
               
               
               Cow position:chr6:24109084-24109332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 192

               
               
               Conread position:237-485
               
               
               Cow position:chr6:1468394-1468149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):212, 9

               
               
               Conread position:237-502
               
               
               Cow position:chr6:31519978-31520244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:238-473
               
               
               Cow position:chr6:41466751-41466512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:238-488
               
               
               Cow position:chr6:37488115-37487874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):89, 181

               
               
               Conread position:238-501
               
               
               Cow position:chr6:21590118-21590386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:238-501
               
               
               Cow position:chr6:59296180-59296440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:238-502
               
               
               Cow position:chr6:36852022-36852288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:238-526
               
               
               Cow position:chr6:47025871-47026158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):142, 32

               
               
               Conread position:239-502
               
               
               Cow position:chr6:58594709-58594461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):211, 39

               
               
               Conread position:240-501
               
               
               Cow position:chr6:53271197-53271459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:240-536
               
               
               Cow position:chr6:54925274-54924979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:241-501
               
               
               Cow position:chr6:1509964-1510226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:242-480
               
               
               Cow position:chr6:40861810-40861578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:242-506
               
               
               Cow position:chr6:40570277-40570007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 200

               
               
               Conread position:242-565
               
               
               Cow position:chr6:29077125-29077438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-577
               
               
               Cow position:chr6:25783701-25784036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):154, 128

               
               
               Conread position:243-491
               
               
               Cow position:chr6:67214141-67214387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):207, 215

               
               
               Conread position:243-501
               
               
               Cow position:chr6:28294279-28294020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:243-501
               
               
               Cow position:chr6:50983578-50983838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:244-446
               
               
               Cow position:chr6:19496976-19497178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):84, 94

               
               
               Conread position:245-501
               
               
               Cow position:chr6:55762781-55763045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:245-502
               
               
               Cow position:chr6:27870158-27870411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:246-528
               
               
               Cow position:chr6:22804972-22804690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 91

               
               
               Conread position:246-535
               
               
               Cow position:chr6:20747065-20747346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):237, 33

               
               
               Conread position:247-506
               
               
               Cow position:chr6:19243912-19244172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):177, 85

               
               
               Conread position:249-502
               
               
               Cow position:chr6:16276280-16276537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 178

               
               
               Conread position:250-457
               
               
               Cow position:chr6:1294087-1293885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:250-501
               
               
               Cow position:chr6:9320843-9321085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:250-525
               
               
               Cow position:chr6:6342837-6343101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:251-500
               
               
               Cow position:chr6:17608452-17608207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:251-501
               
               
               Cow position:chr6:65818678-65818426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:251-515
               
               
               Cow position:chr6:30893117-30892853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 248

               
               
               Conread position:252-528
               
               
               Cow position:chr6:63768454-63768184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:253-416
               
               
               Cow position:chr6:1537518-1537683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:253-431
               
               
               Cow position:chr6:43346033-43345856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:253-432
               
               
               Cow position:chr6:39996037-39995857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:253-476
               
               
               Cow position:chr6:11160629-11160402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):100, 164

               
               
               Conread position:253-501
               
               
               Cow position:chr6:2074053-2074303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:253-501
               
               
               Cow position:chr6:2196240-2196489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:253-501
               
               
               Cow position:chr6:6557427-6557676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:253-501
               
               
               Cow position:chr6:65898606-65898366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):180, 67

               
               
               Conread position:253-502
               
               
               Cow position:chr6:65866874-65866621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:253-525
               
               
               Cow position:chr6:3375190-3374918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):72, 208

               
               
               Conread position:253-526
               
               
               Cow position:chr6:45793212-45793483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):197, 85

               
               
               Conread position:253-526
               
               
               Cow position:chr6:60931496-60931223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:253-529
               
               
               Cow position:chr6:26636197-26636470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:253-543
               
               
               Cow position:chr6:25223867-25223583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:254-501
               
               
               Cow position:chr6:56501720-56501967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-501
               
               
               Cow position:chr6:11638326-11638085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:255-525
               
               
               Cow position:chr6:58073448-58073716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):155, 22

               
               
               Conread position:256-429
               
               
               Cow position:chr6:16620174-16620347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 113

               
               
               Conread position:256-444
               
               
               Cow position:chr6:24652731-24652912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):176, 76

               
               
               Conread position:256-501
               
               
               Cow position:chr6:2012438-2012677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:256-501
               
               
               Cow position:chr6:46584691-46584939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):70, 84

               
               
               Conread position:256-501
               
               
               Cow position:chr6:55040808-55040562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:256-501
               
               
               Cow position:chr6:56441521-56441275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:256-502
               
               
               Cow position:chr6:60441554-60441801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:257-426
               
               
               Cow position:chr6:56926602-56926771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:257-441
               
               
               Cow position:chr6:24759249-24759066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:257-457
               
               
               Cow position:chr6:65874757-65874556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:257-501
               
               
               Cow position:chr6:38061172-38061417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:258-426
               
               
               Cow position:chr6:57283719-57283552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:259-491
               
               
               Cow position:chr6:10106608-10106375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:259-492
               
               
               Cow position:chr6:23695416-23695644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):191, 20

               
               
               Conread position:259-501
               
               
               Cow position:chr6:39091963-39092198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:259-503
               
               
               Cow position:chr6:42518381-42518627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:260-526
               
               
               Cow position:chr6:14397178-14397439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:263-457
               
               
               Cow position:chr6:55688196-55688392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:263-482
               
               
               Cow position:chr6:1498729-1498946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 19

               
               
               Conread position:263-487
               
               
               Cow position:chr6:9025464-9025686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):147, 93

               
               
               Conread position:263-506
               
               
               Cow position:chr6:28322755-28322509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:264-452
               
               
               Cow position:chr6:34195380-34195570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:265-481
               
               
               Cow position:chr6:52900437-52900659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:266-464
               
               
               Cow position:chr6:5276387-5276193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:266-494
               
               
               Cow position:chr6:46465253-46465476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:266-524
               
               
               Cow position:chr6:51393223-51393479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 53

               
               
               Conread position:266-530
               
               
               Cow position:chr6:54872623-54872357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:267-447
               
               
               Cow position:chr6:49692789-49692969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):166, 172

               
               
               Conread position:268-496
               
               
               Cow position:chr6:19443030-19443250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):182, 57

               
               
               Conread position:268-528
               
               
               Cow position:chr6:58880742-58881002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):182, 192

               
               
               Conread position:268-536
               
               
               Cow position:chr6:10422565-10422835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):220, 145

               
               
               Conread position:269-501
               
               
               Cow position:chr6:8442985-8442752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:269-501
               
               
               Cow position:chr6:58940798-58940567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):159, 86

               
               
               Conread position:269-507
               
               
               Cow position:chr6:22628156-22627916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:270-501
               
               
               Cow position:chr6:33489661-33489429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:271-492
               
               
               Cow position:chr6:6614875-6615093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 66

               
               
               Conread position:271-501
               
               
               Cow position:chr6:726564-726337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:271-526
               
               
               Cow position:chr6:64426612-64426867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):6, 56

               
               
               Conread position:271-531
               
               
               Cow position:chr6:23249134-23248882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:272-501
               
               
               Cow position:chr6:66199219-66199445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):156, 65

               
               
               Conread position:274-501
               
               
               Cow position:chr6:19515427-19515655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:274-502
               
               
               Cow position:chr6:55143691-55143468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:276-457
               
               
               Cow position:chr6:8538515-8538694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:277-501
               
               
               Cow position:chr6:13488974-13489199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:277-501
               
               
               Cow position:chr6:53933417-53933193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:277-501
               
               
               Cow position:chr6:55388317-55388542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:277-528
               
               
               Cow position:chr6:55660300-55660058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:278-501
               
               
               Cow position:chr6:34115455-34115671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):172, 112

               
               
               Conread position:279-499
               
               
               Cow position:chr6:39998896-39998678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):167, 53

               
               
               Conread position:279-501
               
               
               Cow position:chr6:41232046-41232267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):167, 149

               
               
               Conread position:280-501
               
               
               Cow position:chr6:40450085-40449862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:280-534
               
               
               Cow position:chr6:54433582-54433332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):174, 182

               
               
               Conread position:280-579
               
               
               Cow position:chr6:61162143-61162440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:282-501
               
               
               Cow position:chr6:48872767-48872551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):164, 42

               
               
               Conread position:283-492
               
               
               Cow position:chr6:44623567-44623357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:285-501
               
               
               Cow position:chr6:52697204-52697421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:285-531
               
               
               Cow position:chr6:5122917-5122672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:286-448
               
               
               Cow position:chr6:63032514-63032674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:287-525
               
               
               Cow position:chr6:37611573-37611801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):159, 83

               
               
               Conread position:289-490
               
               
               Cow position:chr6:23113165-23113375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:290-488
               
               
               Cow position:chr6:55385257-55385450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):166, 35

               
               
               Conread position:290-501
               
               
               Cow position:chr6:11032750-11032538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:290-526
               
               
               Cow position:chr6:33852353-33852109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:291-457
               
               
               Cow position:chr6:39162329-39162494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 101

               
               
               Conread position:291-501
               
               
               Cow position:chr6:25178732-25178518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 138

               
               
               Conread position:291-525
               
               
               Cow position:chr6:23074554-23074789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:292-500
               
               
               Cow position:chr6:3052654-3052451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):158, 26

               
               
               Conread position:292-501
               
               
               Cow position:chr6:31752501-31752707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):136, 92

               
               
               Conread position:293-501
               
               
               Cow position:chr6:18474461-18474252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:293-501
               
               
               Cow position:chr6:43955148-43955357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:293-501
               
               
               Cow position:chr6:45765525-45765316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:293-502
               
               
               Cow position:chr6:28147702-28147912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:293-526
               
               
               Cow position:chr6:39916416-39916649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):157, 127

               
               
               Conread position:293-577
               
               
               Cow position:chr6:30929114-30928819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:294-501
               
               
               Cow position:chr6:19570334-19570126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):139, 134

               
               
               Conread position:295-501
               
               
               Cow position:chr6:7009193-7009397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:296-496
               
               
               Cow position:chr6:209317-209515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:296-501
               
               
               Cow position:chr6:43394133-43394337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):150, 107

               
               
               Conread position:296-502
               
               
               Cow position:chr6:15938394-15938190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:297-491
               
               
               Cow position:chr6:15046650-15046449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:297-501
               
               
               Cow position:chr6:27152275-27152480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:297-502
               
               
               Cow position:chr6:3719435-3719640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:298-501
               
               
               Cow position:chr6:19809133-19809334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 129

               
               
               Conread position:299-492
               
               
               Cow position:chr6:606716-606909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):150, 25

               
               
               Conread position:300-498
               
               
               Cow position:chr6:35121801-35121602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 40

               
               
               Conread position:300-526
               
               
               Cow position:chr6:32262535-32262314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:301-501
               
               
               Cow position:chr6:2898366-2898567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:301-501
               
               
               Cow position:chr6:3574894-3575094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):127, 83

               
               
               Conread position:301-501
               
               
               Cow position:chr6:6068230-6068033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:301-501
               
               
               Cow position:chr6:12550722-12550923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:301-501
               
               
               Cow position:chr6:20173986-20174187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:301-501
               
               
               Cow position:chr6:64720751-64720952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:301-501
               
               
               Cow position:chr6:68829897-68830098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:302-502
               
               
               Cow position:chr6:9207876-9207673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 121

               
               
               Conread position:303-501
               
               
               Cow position:chr6:11185030-11185229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:304-501
               
               
               Cow position:chr6:42931638-42931441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:304-501
               
               
               Cow position:chr6:51544471-51544273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:304-502
               
               
               Cow position:chr6:14064200-14064002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:304-507
               
               
               Cow position:chr6:5302938-5302737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:304-526
               
               
               Cow position:chr6:38900299-38900075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:306-528
               
               
               Cow position:chr6:37829952-37829738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:307-496
               
               
               Cow position:chr6:28503797-28503987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 121

               
               
               Conread position:307-501
               
               
               Cow position:chr6:17865000-17865195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:307-501
               
               
               Cow position:chr6:67403758-67403563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:307-547
               
               
               Cow position:chr6:10612316-10612554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:308-524
               
               
               Cow position:chr6:20419997-20419784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:309-526
               
               
               Cow position:chr6:6038645-6038428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):186, 45

               
               
               Conread position:311-501
               
               
               Cow position:chr6:2894694-2894883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:311-507
               
               
               Cow position:chr6:27240500-27240301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:312-491
               
               
               Cow position:chr6:1891394-1891219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:312-501
               
               
               Cow position:chr6:222973-222784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:313-448
               
               
               Cow position:chr6:32135225-32135361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:313-501
               
               
               Cow position:chr6:54648058-54647870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:313-504
               
               
               Cow position:chr6:68048717-68048909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:313-534
               
               
               Cow position:chr6:30315661-30315438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:313-568
               
               
               Cow position:chr6:7824078-7824329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 153

               
               
               Conread position:314-509
               
               
               Cow position:chr6:49707130-49706935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:314-526
               
               
               Cow position:chr6:31953212-31953001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:315-501
               
               
               Cow position:chr6:49963545-49963358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:316-501
               
               
               Cow position:chr6:13597550-13597364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:316-501
               
               
               Cow position:chr6:39088244-39088427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:316-501
               
               
               Cow position:chr6:41567303-41567489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:317-526
               
               
               Cow position:chr6:39099624-39099409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:318-501
               
               
               Cow position:chr6:2185881-2185697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:319-501
               
               
               Cow position:chr6:25207058-25207241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:319-501
               
               
               Cow position:chr6:25822525-25822343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:319-504
               
               
               Cow position:chr6:18962047-18961862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:319-539
               
               
               Cow position:chr6:34100372-34100146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:320-491
               
               
               Cow position:chr6:24557067-24557240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:320-504
               
               
               Cow position:chr6:55040901-55041086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:320-534
               
               
               Cow position:chr6:39957835-39958048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:321-501
               
               
               Cow position:chr6:24757874-24757693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:321-506
               
               
               Cow position:chr6:7835504-7835691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:321-532
               
               
               Cow position:chr6:62211220-62211430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:322-525
               
               
               Cow position:chr6:49391635-49391434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:322-526
               
               
               Cow position:chr6:21541549-21541753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 106

               
               
               Conread position:322-527
               
               
               Cow position:chr6:41707087-41707289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 104

               
               
               Conread position:323-501
               
               
               Cow position:chr6:18418976-18418797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:323-526
               
               
               Cow position:chr6:58075698-58075902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:325-563
               
               
               Cow position:chr6:3113436-3113194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):112, 150

               
               
               Conread position:327-455
               
               
               Cow position:chr6:30159045-30159174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:328-542
               
               
               Cow position:chr6:13717294-13717506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:332-494
               
               
               Cow position:chr6:61268609-61268772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:332-501
               
               
               Cow position:chr6:55842687-55842516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:332-501
               
               
               Cow position:chr6:61443625-61443455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 82

               
               
               Conread position:334-501
               
               
               Cow position:chr6:8636763-8636931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:334-501
               
               
               Cow position:chr6:21857373-21857541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:334-501
               
               
               Cow position:chr6:28180476-28180310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:334-501
               
               
               Cow position:chr6:33460579-33460747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 94

               
               
               Conread position:334-501
               
               
               Cow position:chr6:37736557-37736725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:334-501
               
               
               Cow position:chr6:40169541-40169373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:337-500
               
               
               Cow position:chr6:643103-642939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:337-501
               
               
               Cow position:chr6:13531304-13531469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:337-501
               
               
               Cow position:chr6:28791318-28791489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:337-501
               
               
               Cow position:chr6:45751573-45751738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:337-502
               
               
               Cow position:chr6:29833600-29833434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:338-500
               
               
               Cow position:chr6:33509077-33509236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:338-501
               
               
               Cow position:chr6:21396578-21396413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:339-501
               
               
               Cow position:chr6:24713732-24713569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:339-501
               
               
               Cow position:chr6:38896382-38896217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:340-501
               
               
               Cow position:chr6:34386773-34386935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:341-528
               
               
               Cow position:chr6:52240046-52239859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:343-526
               
               
               Cow position:chr6:59277706-59277521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:343-539
               
               
               Cow position:chr6:22663218-22663020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:351-542
               
               
               Cow position:chr6:5866889-5866699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 170

               
               
               Conread position:357-506
               
               
               Cow position:chr6:4824471-4824620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:357-506
               
               
               Cow position:chr6:35274963-35274814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 144

               
               
               Conread position:357-531
               
               
               Cow position:chr6:33470771-33470947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 155

               
               
               Conread position:359-501
               
               
               Cow position:chr6:5958499-5958360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:360-492
               
               
               Cow position:chr6:10706394-10706264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:360-492
               
               
               Cow position:chr6:18142644-18142776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:360-494
               
               
               Cow position:chr6:60516243-60516378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:360-497
               
               
               Cow position:chr6:42727006-42726868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr6:14198310-14198451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr6:18503151-18503009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr6:41470580-41470722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:360-502
               
               
               Cow position:chr6:40323625-40323768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:360-513
               
               
               Cow position:chr6:60781945-60781792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:360-525
               
               
               Cow position:chr6:44375403-44375568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:360-528
               
               
               Cow position:chr6:610920-611085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:360-543
               
               
               Cow position:chr6:42106532-42106349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:360-584
               
               
               Cow position:chr6:16251703-16251924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:361-490
               
               
               Cow position:chr6:52478929-52478798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:361-501
               
               
               Cow position:chr6:59077048-59076907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:361-583
               
               
               Cow position:chr6:58370081-58370303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 154

               
               
               Conread position:362-497
               
               
               Cow position:chr6:59620154-59620291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:363-501
               
               
               Cow position:chr6:28558953-28559092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:363-501
               
               
               Cow position:chr6:65711343-65711482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:364-531
               
               
               Cow position:chr6:60891132-60890964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:365-496
               
               
               Cow position:chr6:45155641-45155773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:365-501
               
               
               Cow position:chr6:20268197-20268332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:366-533
               
               
               Cow position:chr6:11704712-11704879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:367-501
               
               
               Cow position:chr6:47640980-47640847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:367-501
               
               
               Cow position:chr6:53178157-53178294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:371-488
               
               
               Cow position:chr6:16518350-16518232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:371-531
               
               
               Cow position:chr6:37735302-37735465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:372-501
               
               
               Cow position:chr6:18987747-18987875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:372-501
               
               
               Cow position:chr6:28811474-28811347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:375-484
               
               
               Cow position:chr6:67969434-67969324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:375-501
               
               
               Cow position:chr6:55361634-55361761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:375-506
               
               
               Cow position:chr6:12648053-12648186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:376-497
               
               
               Cow position:chr6:52627139-52627261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:376-501
               
               
               Cow position:chr6:46246566-46246440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:376-528
               
               
               Cow position:chr6:1561634-1561784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 82

               
               
               Conread position:378-525
               
               
               Cow position:chr6:61575124-61575270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:378-534
               
               
               Cow position:chr6:35132691-35132848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:381-524
               
               
               Cow position:chr6:65871447-65871590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:383-534
               
               
               Cow position:chr6:56376854-56376700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:384-534
               
               
               Cow position:chr6:4156008-4155857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:386-501
               
               
               Cow position:chr6:32427788-32427906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:386-501
               
               
               Cow position:chr6:41677646-41677762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:388-534
               
               
               Cow position:chr6:47923764-47923615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0
Show alignments to all cow chromosomes.
Conread position:	73-399
Cow position:	chr6:52245879-52246196 (view UCSC Genome Browser custom track)
Alignm length:	333
Alignm identity:	239
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	40, 46
Conread position:	73-535
Cow position:	chr6:65935274-65934824 (view UCSC Genome Browser custom track)
Alignm length:	471
Alignm identity:	319
Alignm E-value:	0
Alignm gaps (pig, cow):	28, 15
Conread position:	83-500
Cow position:	chr6:40251418-40251000 (view UCSC Genome Browser custom track)
Alignm length:	427
Alignm identity:	294
Alignm E-value:	0
Alignm gaps (pig, cow):	24, 111
Conread position:	89-492
Cow position:	chr6:40031423-40031839 (view UCSC Genome Browser custom track)
Alignm length:	425
Alignm identity:	283
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	21, 68
Conread position:	89-526
Cow position:	chr6:15471419-15470986 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	305
Alignm E-value:	0
Alignm gaps (pig, cow):	55, 70
Conread position:	95-501
Cow position:	chr6:13740950-13741353 (view UCSC Genome Browser custom track)
Alignm length:	408
Alignm identity:	272
Alignm E-value:	0
Alignm gaps (pig, cow):	333, 92
Conread position:	96-524
Cow position:	chr6:2087921-2088337 (view UCSC Genome Browser custom track)
Alignm length:	435
Alignm identity:	302
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 11
Conread position:	97-525
Cow position:	chr6:618821-619221 (view UCSC Genome Browser custom track)
Alignm length:	437
Alignm identity:	291
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	17, 25
Conread position:	98-501
Cow position:	chr6:49411417-49411024 (view UCSC Genome Browser custom track)
Alignm length:	406
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	11, 50
Conread position:	98-533
Cow position:	chr6:41413773-41413363 (view UCSC Genome Browser custom track)
Alignm length:	439
Alignm identity:	301
Alignm E-value:	0
Alignm gaps (pig, cow):	39, 9
Conread position:	98-542
Cow position:	chr6:59507611-59508035 (view UCSC Genome Browser custom track)
Alignm length:	448
Alignm identity:	316
Alignm E-value:	0
Alignm gaps (pig, cow):	24, 9
Conread position:	99-308
Cow position:	chr6:10681393-10681594 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	150
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	50, 10
Conread position:	99-398
Cow position:	chr6:12352245-12352539 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	210
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	22, 10
Conread position:	99-404
Cow position:	chr6:32125355-32125655 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	226
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	46, 10
Conread position:	99-424
Cow position:	chr6:13695767-13695449 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	224
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	28, 22
Conread position:	99-427
Cow position:	chr6:46225556-46225235 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	234
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 19
Conread position:	99-430
Cow position:	chr6:39912731-39913055 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	240
Alignm E-value:	0
Alignm gaps (pig, cow):	22, 10
Conread position:	99-444
Cow position:	chr6:6278196-6278525 (view UCSC Genome Browser custom track)
Alignm length:	348
Alignm identity:	246
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	13, 23
Conread position:	99-457
Cow position:	chr6:33301077-33301429 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	256
Alignm E-value:	0
Alignm gaps (pig, cow):	55, 10
Conread position:	99-469
Cow position:	chr6:39136907-39137264 (view UCSC Genome Browser custom track)
Alignm length:	375
Alignm identity:	263
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 10