Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 16-201 |
| Cow position: | chr1:95062796-95062978 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 33-286 |
| Cow position: | chr1:16389728-16389969 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 42-191 |
| Cow position: | chr1:91025898-91026045 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 42-201 |
| Cow position: | chr1:81112792-81112636 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 42-209 |
| Cow position: | chr1:84245887-84245721 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 42-218 |
| Cow position: | chr1:71964999-71964826 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-224 |
| Cow position: | chr1:14305090-14305263 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-227 |
| Cow position: | chr1:89096721-89096536 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 152, 33 |
| Conread position: | 42-270 |
| Cow position: | chr1:17133707-17133933 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 42-281 |
| Cow position: | chr1:578962-578726 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 42-282 |
| Cow position: | chr1:19555192-19554954 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-283 |
| Cow position: | chr1:43584117-43584357 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-304 |
| Cow position: | chr1:43223688-43223431 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 27 |
| Conread position: | 43-318 |
| Cow position: | chr1:3266076-3266349 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 182, 29 |
| Conread position: | 44-214 |
| Cow position: | chr1:44097257-44097425 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 154, 31 |
| Conread position: | 45-192 |
| Cow position: | chr1:32496063-32496209 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-287 |
| Cow position: | chr1:1064482-1064718 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 32 |
| Conread position: | 45-304 |
| Cow position: | chr1:91972670-91972415 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 30 |
| Conread position: | 45-330 |
| Cow position: | chr1:51822582-51822302 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 30 |
| Conread position: | 46-290 |
| Cow position: | chr1:92045397-92045639 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 29 |
| Conread position: | 62-197 |
| Cow position: | chr1:76595942-76596074 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 75-286 |
| Cow position: | chr1:27875788-27875999 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 98, 104 |
| Conread position: | 78-226 |
| Cow position: | chr1:91777806-91777955 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 139, 111 |
| Conread position: | 79-282 |
| Cow position: | chr1:45880010-45879807 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-317 |
| Cow position: | chr1:31519103-31518890 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 180, 14 |
| Conread position: | 117-276 |
| Cow position: | chr1:82405772-82405929 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 117-315 |
| Cow position: | chr1:102649793-102649987 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 125-333 |
| Cow position: | chr1:60503047-60502826 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 156, 81 |
| Conread position: | 126-287 |
| Cow position: | chr1:73085883-73085721 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 128-251 |
| Cow position: | chr1:91852473-91852351 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 128-276 |
| Cow position: | chr1:9277906-9278049 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-276 |
| Cow position: | chr1:91669028-91669177 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 128-281 |
| Cow position: | chr1:67395697-67395846 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 128-281 |
| Cow position: | chr1:79171081-79170928 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-282 |
| Cow position: | chr1:84793504-84793350 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-304 |
| Cow position: | chr1:6482466-6482293 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-304 |
| Cow position: | chr1:17654348-17654176 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 128-304 |
| Cow position: | chr1:49797717-49797545 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 128-304 |
| Cow position: | chr1:71107810-71107980 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 128-319 |
| Cow position: | chr1:40204082-40204277 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 128-331 |
| Cow position: | chr1:57533448-57533657 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 128-332 |
| Cow position: | chr1:84314298-84314092 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 132-275 |
| Cow position: | chr1:45987955-45987818 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 135-304 |
| Cow position: | chr1:27972721-27972888 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 149, 131 |
| Conread position: | 169-297 |
| Cow position: | chr1:81152391-81152264 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 174-304 |
| Cow position: | chr1:8941773-8941643 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.