Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 39-209 |
| Cow position: | chr11:61286748-61286918 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 42-188 |
| Cow position: | chr11:75202172-75202031 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 42-191 |
| Cow position: | chr11:5251778-5251925 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 42-191 |
| Cow position: | chr11:36901189-36901337 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-197 |
| Cow position: | chr11:11683049-11682897 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-209 |
| Cow position: | chr11:5188497-5188333 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-209 |
| Cow position: | chr11:18480618-18480777 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-230 |
| Cow position: | chr11:32601025-32600839 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 42-277 |
| Cow position: | chr11:48662621-48662855 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 42-284 |
| Cow position: | chr11:64841709-64841483 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-285 |
| Cow position: | chr11:42471737-42471979 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 42-286 |
| Cow position: | chr11:16197570-16197796 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-298 |
| Cow position: | chr11:37032142-37032398 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 33 |
| Conread position: | 42-298 |
| Cow position: | chr11:82102850-82103101 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 42-304 |
| Cow position: | chr11:73450298-73450554 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 42-332 |
| Cow position: | chr11:75260204-75259911 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 45-191 |
| Cow position: | chr11:5144224-5144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 30 |
| Conread position: | 45-191 |
| Cow position: | chr11:6605084-6604939 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-196 |
| Cow position: | chr11:17706780-17706631 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 45-282 |
| Cow position: | chr11:55010737-55010973 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-301 |
| Cow position: | chr11:64888258-64887999 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 32 |
| Conread position: | 45-304 |
| Cow position: | chr11:37916040-37915784 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 107 |
| Conread position: | 45-339 |
| Cow position: | chr11:2421463-2421169 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 30 |
| Conread position: | 52-304 |
| Cow position: | chr11:40620833-40620587 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 236, 16 |
| Conread position: | 65-286 |
| Cow position: | chr11:32777036-32777252 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 84-315 |
| Cow position: | chr11:26368301-26368074 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 204, 41 |
| Conread position: | 114-286 |
| Cow position: | chr11:51329677-51329508 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 118-329 |
| Cow position: | chr11:60204572-60204364 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 128-251 |
| Cow position: | chr11:82709595-82709476 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 128-272 |
| Cow position: | chr11:85710492-85710636 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 128-279 |
| Cow position: | chr11:8476764-8476915 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-281 |
| Cow position: | chr11:30544675-30544527 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 128-281 |
| Cow position: | chr11:35428542-35428695 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 128-281 |
| Cow position: | chr11:61518708-61518861 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-286 |
| Cow position: | chr11:74535238-74535084 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 128-296 |
| Cow position: | chr11:38643482-38643316 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 122, 133 |
| Conread position: | 128-304 |
| Cow position: | chr11:76939365-76939194 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-304 |
| Cow position: | chr11:80806996-80807170 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 128-330 |
| Cow position: | chr11:4593078-4593286 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 144, 135 |
| Conread position: | 128-330 |
| Cow position: | chr11:36239257-36239458 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 185, 161 |
| Conread position: | 132-281 |
| Cow position: | chr11:70794806-70794955 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 132-283 |
| Cow position: | chr11:68981907-68982058 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-304 |
| Cow position: | chr11:4396366-4396526 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 149, 13 |
| Conread position: | 140-285 |
| Cow position: | chr11:5615811-5615958 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 140-286 |
| Cow position: | chr11:28243056-28242912 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 141-342 |
| Cow position: | chr11:5161860-5161656 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 142-324 |
| Cow position: | chr11:37008403-37008586 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 154, 181 |
| Conread position: | 151-330 |
| Cow position: | chr11:44149194-44149009 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
Show alignments to all cow chromosomes.