Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 41-286 |
| Cow position: | chr12:19382883-19383128 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 42-213 |
| Cow position: | chr12:28545433-28545270 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 42-225 |
| Cow position: | chr12:30922311-30922129 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-282 |
| Cow position: | chr12:1435699-1435461 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-282 |
| Cow position: | chr12:24176716-24176487 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr12:19189849-19189615 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 42-286 |
| Cow position: | chr12:24544904-24545147 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-298 |
| Cow position: | chr12:15383179-15383432 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 27 |
| Conread position: | 43-304 |
| Cow position: | chr12:12175819-12175550 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 158 |
| Conread position: | 45-282 |
| Cow position: | chr12:36596673-36596907 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 46-286 |
| Cow position: | chr12:12010248-12010481 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 82-304 |
| Cow position: | chr12:13025035-13025256 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 204, 112 |
| Conread position: | 84-244 |
| Cow position: | chr12:30190055-30189898 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 84-304 |
| Cow position: | chr12:4475163-4475380 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 176 |
| Conread position: | 84-315 |
| Cow position: | chr12:39318041-39318268 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 204, 106 |
| Conread position: | 109-266 |
| Cow position: | chr12:5964093-5963937 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 117-304 |
| Cow position: | chr12:10787608-10787422 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 124-304 |
| Cow position: | chr12:44477006-44476833 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 128-273 |
| Cow position: | chr12:33561786-33561641 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-275 |
| Cow position: | chr12:10353942-10354092 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 128-281 |
| Cow position: | chr12:11934745-11934596 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 128-281 |
| Cow position: | chr12:25434090-25433942 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 128-282 |
| Cow position: | chr12:4309283-4309438 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 137, 85 |
| Conread position: | 128-304 |
| Cow position: | chr12:12025506-12025331 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 140 |
| Conread position: | 131-282 |
| Cow position: | chr12:44952523-44952375 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 138-304 |
| Cow position: | chr12:45178425-45178259 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 146, 155 |
| Conread position: | 140-276 |
| Cow position: | chr12:3588375-3588511 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-276 |
| Cow position: | chr12:6068919-6068783 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-281 |
| Cow position: | chr12:27729858-27729717 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-298 |
| Cow position: | chr12:30271319-30271165 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 145-272 |
| Cow position: | chr12:6268438-6268565 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-304 |
| Cow position: | chr12:15743417-15743264 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 132, 142 |
| Conread position: | 175-286 |
| Cow position: | chr12:39640258-39640147 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-287 |
| Cow position: | chr12:18131853-18131963 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.