Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 41-254 |
| Cow position: | chr13:33766881-33766667 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 41-332 |
| Cow position: | chr13:16045706-16045990 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 42-224 |
| Cow position: | chr13:43360414-43360592 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-248 |
| Cow position: | chr13:41843315-41843111 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-273 |
| Cow position: | chr13:61030891-61031122 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 33 |
| Conread position: | 42-285 |
| Cow position: | chr13:16571011-16570777 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr13:19546307-19546547 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 42-315 |
| Cow position: | chr13:52282202-52282462 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 42-330 |
| Cow position: | chr13:53161412-53161704 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 210, 33 |
| Conread position: | 45-226 |
| Cow position: | chr13:61895085-61894905 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 45-352 |
| Cow position: | chr13:31494942-31494630 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 53-315 |
| Cow position: | chr13:19534597-19534339 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 21 |
| Conread position: | 75-194 |
| Cow position: | chr13:19282022-19282140 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 84-276 |
| Cow position: | chr13:8617210-8617019 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 87-285 |
| Cow position: | chr13:5274294-5274092 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 110-317 |
| Cow position: | chr13:54779072-54779277 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 114-304 |
| Cow position: | chr13:43703393-43703206 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 128-272 |
| Cow position: | chr13:12765939-12766083 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-273 |
| Cow position: | chr13:2335894-2336036 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-273 |
| Cow position: | chr13:10798711-10798567 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 128-281 |
| Cow position: | chr13:1234382-1234535 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-281 |
| Cow position: | chr13:49536861-49537009 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 128-282 |
| Cow position: | chr13:26182821-26182974 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 128-283 |
| Cow position: | chr13:20704733-20704582 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 141, 99 |
| Conread position: | 128-304 |
| Cow position: | chr13:13760395-13760570 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 128-304 |
| Cow position: | chr13:15702630-15702803 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 153, 135 |
| Conread position: | 128-304 |
| Cow position: | chr13:27108803-27108628 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 128-330 |
| Cow position: | chr13:822698-822904 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 128-330 |
| Cow position: | chr13:17170249-17170029 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 129-329 |
| Cow position: | chr13:52218014-52218213 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 132-257 |
| Cow position: | chr13:12319683-12319558 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-281 |
| Cow position: | chr13:54325860-54326010 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 132-329 |
| Cow position: | chr13:25812930-25812727 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 163, 20 |
| Conread position: | 135-356 |
| Cow position: | chr13:18318204-18317981 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 141-301 |
| Cow position: | chr13:17882062-17882220 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 156, 42 |
| Conread position: | 175-304 |
| Cow position: | chr13:52442218-52442347 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 106, 119 |
Show alignments to all cow chromosomes.