Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 42-197 |
| Cow position: | chr16:27974462-27974617 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 42-209 |
| Cow position: | chr16:26065817-26065651 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 42-240 |
| Cow position: | chr16:5249577-5249382 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr16:32884832-32884585 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 42-286 |
| Cow position: | chr16:45572974-45572730 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 33 |
| Conread position: | 42-296 |
| Cow position: | chr16:15878825-15879076 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 43-214 |
| Cow position: | chr16:8786556-8786726 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 43-321 |
| Cow position: | chr16:49898440-49898713 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 45-168 |
| Cow position: | chr16:32173517-32173398 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-282 |
| Cow position: | chr16:33426716-33426480 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-323 |
| Cow position: | chr16:33595085-33594807 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 30 |
| Conread position: | 46-272 |
| Cow position: | chr16:15126110-15125892 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 55-331 |
| Cow position: | chr16:6160232-6160508 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 58-286 |
| Cow position: | chr16:30800284-30800059 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 60-338 |
| Cow position: | chr16:52928358-52928629 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 228, 9 |
| Conread position: | 75-285 |
| Cow position: | chr16:54011594-54011395 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 154 |
| Conread position: | 75-304 |
| Cow position: | chr16:9574880-9575113 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 43, 222 |
| Conread position: | 75-317 |
| Cow position: | chr16:24571228-24571466 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 233, 82 |
| Conread position: | 76-282 |
| Cow position: | chr16:33129260-33129459 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 84-293 |
| Cow position: | chr16:43501790-43501993 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 193, 9 |
| Conread position: | 84-298 |
| Cow position: | chr16:19640191-19639975 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 85-299 |
| Cow position: | chr16:46403916-46403710 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 87-254 |
| Cow position: | chr16:30712501-30712666 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 158, 34 |
| Conread position: | 108-286 |
| Cow position: | chr16:9252533-9252714 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 172 |
| Conread position: | 118-304 |
| Cow position: | chr16:16435989-16436172 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 118-331 |
| Cow position: | chr16:16429842-16430059 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 208 |
| Conread position: | 125-276 |
| Cow position: | chr16:34760556-34760706 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 128-239 |
| Cow position: | chr16:6683896-6684007 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-298 |
| Cow position: | chr16:42046898-42046729 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 128-301 |
| Cow position: | chr16:6087368-6087543 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 128-304 |
| Cow position: | chr16:6083790-6083966 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-304 |
| Cow position: | chr16:26791249-26791066 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 172 |
| Conread position: | 128-315 |
| Cow position: | chr16:33986199-33986386 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 180, 153 |
| Conread position: | 128-344 |
| Cow position: | chr16:39220205-39219987 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 129-297 |
| Cow position: | chr16:11810897-11810730 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 129-344 |
| Cow position: | chr16:12525698-12525919 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 132-315 |
| Cow position: | chr16:9569823-9569647 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 140-281 |
| Cow position: | chr16:56872144-56872284 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 140-282 |
| Cow position: | chr16:43165010-43164868 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-304 |
| Cow position: | chr16:35035803-35035639 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 99, 143 |
| Conread position: | 153-331 |
| Cow position: | chr16:41581532-41581335 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 187-299 |
| Cow position: | chr16:32171696-32171584 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.