Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 41-209 |
| Cow position: | chr17:25546405-25546233 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 41-286 |
| Cow position: | chr17:22043045-22043285 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 42-171 |
| Cow position: | chr17:892078-891950 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-191 |
| Cow position: | chr17:5348408-5348262 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 42-197 |
| Cow position: | chr17:1757095-1756943 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-197 |
| Cow position: | chr17:42337576-42337733 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 42-209 |
| Cow position: | chr17:17642033-17641867 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 42-224 |
| Cow position: | chr17:17449341-17449160 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 42-225 |
| Cow position: | chr17:33548012-33548192 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 42-237 |
| Cow position: | chr17:22581656-22581847 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 42-286 |
| Cow position: | chr17:38875022-38874778 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 33 |
| Conread position: | 42-328 |
| Cow position: | chr17:21613551-21613839 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 43-197 |
| Cow position: | chr17:1730081-1730233 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 45-195 |
| Cow position: | chr17:6762964-6763112 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-197 |
| Cow position: | chr17:21460831-21460980 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-330 |
| Cow position: | chr17:23564855-23565138 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 30 |
| Conread position: | 75-286 |
| Cow position: | chr17:12739956-12739745 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 169, 62 |
| Conread position: | 75-286 |
| Cow position: | chr17:25557082-25556871 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-276 |
| Cow position: | chr17:22511464-22511651 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 96-276 |
| Cow position: | chr17:6841434-6841261 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 110-286 |
| Cow position: | chr17:44533175-44533001 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 117-281 |
| Cow position: | chr17:19975580-19975420 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 117-328 |
| Cow position: | chr17:7329563-7329354 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 119-304 |
| Cow position: | chr17:26222541-26222359 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 159, 54 |
| Conread position: | 127-286 |
| Cow position: | chr17:13381833-13381989 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 128-272 |
| Cow position: | chr17:25190615-25190473 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 128-277 |
| Cow position: | chr17:3764462-3764317 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 128-281 |
| Cow position: | chr17:28083985-28083836 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 128-287 |
| Cow position: | chr17:21480085-21479926 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-281 |
| Cow position: | chr17:6881096-6880979 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.