Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 14-188 |
| Cow position: | chr2:70829521-70829692 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 37-274 |
| Cow position: | chr2:35995047-35994809 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 42-197 |
| Cow position: | chr2:66981904-66982054 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 42-202 |
| Cow position: | chr2:57449330-57449173 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 42-208 |
| Cow position: | chr2:30639443-30639604 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-224 |
| Cow position: | chr2:45308725-45308905 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-237 |
| Cow position: | chr2:45007825-45007627 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 133 |
| Conread position: | 42-286 |
| Cow position: | chr2:39580292-39580065 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr2:40474014-40473772 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr2:76048136-76048376 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 42-298 |
| Cow position: | chr2:44204243-44203988 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 42-299 |
| Cow position: | chr2:39790334-39790590 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 42-301 |
| Cow position: | chr2:76037761-76037509 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-305 |
| Cow position: | chr2:6938851-6939115 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 33 |
| Conread position: | 42-339 |
| Cow position: | chr2:23607960-23607659 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 42-339 |
| Cow position: | chr2:39796666-39796375 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 43-209 |
| Cow position: | chr2:86527782-86527949 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 44-264 |
| Cow position: | chr2:46267170-46267390 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 196, 9 |
| Conread position: | 54-191 |
| Cow position: | chr2:46008734-46008599 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 62-286 |
| Cow position: | chr2:65780664-65780448 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 201, 12 |
| Conread position: | 68-318 |
| Cow position: | chr2:5483545-5483783 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 220, 90 |
| Conread position: | 75-197 |
| Cow position: | chr2:74693225-74693105 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 75-300 |
| Cow position: | chr2:2072994-2072767 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 86-296 |
| Cow position: | chr2:74897185-74896972 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 169, 103 |
| Conread position: | 91-298 |
| Cow position: | chr2:19236994-19237198 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 197, 35 |
| Conread position: | 102-286 |
| Cow position: | chr2:82928747-82928929 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 128-276 |
| Cow position: | chr2:66060715-66060572 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-276 |
| Cow position: | chr2:69915557-69915700 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 128-281 |
| Cow position: | chr2:15996898-15997050 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-304 |
| Cow position: | chr2:71501737-71501560 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 128-315 |
| Cow position: | chr2:71235207-71235389 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 128-323 |
| Cow position: | chr2:74180338-74180144 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 128-327 |
| Cow position: | chr2:46322123-46322322 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 128-330 |
| Cow position: | chr2:48975376-48975168 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 106, 23 |
| Conread position: | 128-330 |
| Cow position: | chr2:69085926-69086126 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 157, 24 |
| Conread position: | 128-359 |
| Cow position: | chr2:5852202-5852427 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 130-281 |
| Cow position: | chr2:82419222-82419374 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 132-337 |
| Cow position: | chr2:12302928-12303139 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 110, 146 |
| Conread position: | 139-282 |
| Cow position: | chr2:20865893-20866036 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-276 |
| Cow position: | chr2:3436838-3436973 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 145-286 |
| Cow position: | chr2:82137329-82137188 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-334 |
| Cow position: | chr2:47178309-47178121 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 136, 66 |
| Conread position: | 175-281 |
| Cow position: | chr2:44356568-44356674 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-323 |
| Cow position: | chr2:26508315-26508167 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 117 |
| Conread position: | 205-330 |
| Cow position: | chr2:46267358-46267484 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.