Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 41-197 |
| Cow position: | chr27:15106368-15106215 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 42-188 |
| Cow position: | chr27:24717640-24717779 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 42-191 |
| Cow position: | chr27:11478228-11478375 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-201 |
| Cow position: | chr27:26124489-26124646 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 42-282 |
| Cow position: | chr27:24722599-24722351 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 42-286 |
| Cow position: | chr27:1791082-1791320 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr27:11596087-11596314 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-286 |
| Cow position: | chr27:15218341-15218097 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 32 |
| Conread position: | 42-286 |
| Cow position: | chr27:22277403-22277160 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 210, 33 |
| Conread position: | 42-286 |
| Cow position: | chr27:22441664-22441907 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 42-330 |
| Cow position: | chr27:15408644-15408352 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 42-330 |
| Cow position: | chr27:24715939-24715656 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 45-286 |
| Cow position: | chr27:31211840-31211607 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-297 |
| Cow position: | chr27:22630014-22629765 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-300 |
| Cow position: | chr27:13705217-13704964 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 30 |
| Conread position: | 45-304 |
| Cow position: | chr27:12472322-12472594 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 105-315 |
| Cow position: | chr27:1644626-1644413 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 170, 190 |
| Conread position: | 128-281 |
| Cow position: | chr27:5169303-5169150 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-281 |
| Cow position: | chr27:6029821-6029673 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-281 |
| Cow position: | chr27:18497825-18497978 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-288 |
| Cow position: | chr27:9519388-9519228 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-300 |
| Cow position: | chr27:6915752-6915922 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 128-304 |
| Cow position: | chr27:30357130-30356962 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 128-315 |
| Cow position: | chr27:28150751-28150938 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 131, 135 |
| Conread position: | 128-315 |
| Cow position: | chr27:31551194-31551375 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 132-251 |
| Cow position: | chr27:24752690-24752572 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 132-333 |
| Cow position: | chr27:30467216-30467006 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 140-281 |
| Cow position: | chr27:20831936-20832076 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 140-282 |
| Cow position: | chr27:29837044-29836904 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 142-281 |
| Cow position: | chr27:15471611-15471750 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-315 |
| Cow position: | chr27:22335134-22334965 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 158, 148 |
| Conread position: | 175-286 |
| Cow position: | chr27:205102-205213 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.