Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 8-227 |
| Cow position: | chr3:74797065-74797288 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 41-282 |
| Cow position: | chr3:63496206-63495958 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 42-197 |
| Cow position: | chr3:58594837-58594684 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-276 |
| Cow position: | chr3:29842714-29842478 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 42-304 |
| Cow position: | chr3:9188231-9187987 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 246, 31 |
| Conread position: | 42-305 |
| Cow position: | chr3:60492392-60492130 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 35 |
| Conread position: | 42-323 |
| Cow position: | chr3:51414985-51414705 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 42-359 |
| Cow position: | chr3:59579338-59579030 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 33 |
| Conread position: | 45-155 |
| Cow position: | chr3:71470841-71470732 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-282 |
| Cow position: | chr3:36747995-36747760 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-315 |
| Cow position: | chr3:54563788-54563521 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 45-328 |
| Cow position: | chr3:62740222-62739943 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 45-330 |
| Cow position: | chr3:81991653-81991945 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 163, 30 |
| Conread position: | 47-201 |
| Cow position: | chr3:3643305-3643460 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 51-286 |
| Cow position: | chr3:7146426-7146658 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 65-299 |
| Cow position: | chr3:21278002-21278234 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 210, 10 |
| Conread position: | 65-299 |
| Cow position: | chr3:74406829-74406594 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 205, 87 |
| Conread position: | 75-222 |
| Cow position: | chr3:28716980-28716834 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 84-234 |
| Cow position: | chr3:548376-548227 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 84-253 |
| Cow position: | chr3:81527311-81527478 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 84-256 |
| Cow position: | chr3:41407876-41408049 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 84-305 |
| Cow position: | chr3:7813206-7813434 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 94-330 |
| Cow position: | chr3:60535808-60535571 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 205, 120 |
| Conread position: | 96-304 |
| Cow position: | chr3:28629846-28630052 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 192, 93 |
| Conread position: | 117-327 |
| Cow position: | chr3:77691820-77692044 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 126-304 |
| Cow position: | chr3:23654521-23654348 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 157, 32 |
| Conread position: | 128-266 |
| Cow position: | chr3:38705685-38705550 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-271 |
| Cow position: | chr3:2119511-2119368 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-276 |
| Cow position: | chr3:5640982-5640839 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-276 |
| Cow position: | chr3:44569841-44569693 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-280 |
| Cow position: | chr3:2085790-2085645 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 128-281 |
| Cow position: | chr3:30245942-30245789 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-295 |
| Cow position: | chr3:81368135-81368299 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 128-297 |
| Cow position: | chr3:81576930-81576761 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 128-301 |
| Cow position: | chr3:24503366-24503535 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 128-304 |
| Cow position: | chr3:13636421-13636597 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 165 |
| Conread position: | 128-323 |
| Cow position: | chr3:6950088-6950280 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 155, 30 |
| Conread position: | 128-327 |
| Cow position: | chr3:24156329-24156531 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 128-329 |
| Cow position: | chr3:67824170-67824379 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 147, 24 |
| Conread position: | 140-304 |
| Cow position: | chr3:48566129-48565964 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 155 |
| Conread position: | 140-315 |
| Cow position: | chr3:23034879-23035052 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 12 |
| Conread position: | 142-330 |
| Cow position: | chr3:48337785-48337581 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 48 |
Show alignments to all cow chromosomes.