Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 42-197 |
| Cow position: | chr4:45986503-45986656 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 42-272 |
| Cow position: | chr4:53659170-53658941 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 42-286 |
| Cow position: | chr4:121679-121927 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 42-286 |
| Cow position: | chr4:32008684-32008446 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 42-286 |
| Cow position: | chr4:43404342-43404580 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 33 |
| Conread position: | 42-286 |
| Cow position: | chr4:44847193-44847431 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-327 |
| Cow position: | chr4:42962053-42961773 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 150 |
| Conread position: | 42-334 |
| Cow position: | chr4:21005829-21005523 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 236, 30 |
| Conread position: | 45-188 |
| Cow position: | chr4:40252323-40252465 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 47-299 |
| Cow position: | chr4:10861146-10861401 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 27 |
| Conread position: | 52-298 |
| Cow position: | chr4:23690448-23690683 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 91-282 |
| Cow position: | chr4:68407234-68407043 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-301 |
| Cow position: | chr4:62625434-62625231 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 201, 82 |
| Conread position: | 106-310 |
| Cow position: | chr4:57571802-57572002 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 123-330 |
| Cow position: | chr4:63218250-63218452 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 190, 9 |
| Conread position: | 128-281 |
| Cow position: | chr4:50629737-50629589 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 128-283 |
| Cow position: | chr4:57262873-57262719 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-286 |
| Cow position: | chr4:62609854-62609695 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 137, 55 |
| Conread position: | 128-294 |
| Cow position: | chr4:13516048-13515882 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 128-294 |
| Cow position: | chr4:45462438-45462271 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 128-297 |
| Cow position: | chr4:41852845-41853012 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 128-304 |
| Cow position: | chr4:55844520-55844697 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 76 |
| Conread position: | 132-276 |
| Cow position: | chr4:67174708-67174848 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 132-304 |
| Cow position: | chr4:68071825-68071990 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 152, 31 |
| Conread position: | 140-281 |
| Cow position: | chr4:64698073-64697937 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 140-330 |
| Cow position: | chr4:37488975-37489174 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 142-301 |
| Cow position: | chr4:46787884-46787729 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 142-301 |
| Cow position: | chr4:66930197-66930358 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 160-282 |
| Cow position: | chr4:10489876-10489754 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-286 |
| Cow position: | chr4:11012114-11012234 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.