Cow genome map
| Conread name: | Ss1.1-rpigcf0_021306.5 |
| Conread position: | 16-197 |
| Cow position: | chr6:49166618-49166797 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 42-209 |
| Cow position: | chr6:60174481-60174648 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 42-248 |
| Cow position: | chr6:48376525-48376321 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 42-261 |
| Cow position: | chr6:19709514-19709729 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 42-347 |
| Cow position: | chr6:434851-435154 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 33 |
| Conread position: | 43-286 |
| Cow position: | chr6:34023602-34023356 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 154 |
| Conread position: | 45-330 |
| Cow position: | chr6:59988587-59988300 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 45-332 |
| Cow position: | chr6:25810317-25810035 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 33 |
| Conread position: | 59-317 |
| Cow position: | chr6:48024259-48024001 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 236 |
| Conread position: | 75-272 |
| Cow position: | chr6:24304083-24304275 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 77-281 |
| Cow position: | chr6:6380098-6379894 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 83-272 |
| Cow position: | chr6:57965091-57965271 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 83-297 |
| Cow position: | chr6:54431194-54431398 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 84-265 |
| Cow position: | chr6:42988851-42989029 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 5 |
| Conread position: | 86-298 |
| Cow position: | chr6:1629729-1629945 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 164, 67 |
| Conread position: | 93-298 |
| Cow position: | chr6:39706323-39706526 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 114-301 |
| Cow position: | chr6:19711007-19710824 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 116-329 |
| Cow position: | chr6:39743941-39743731 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 126-281 |
| Cow position: | chr6:30021525-30021377 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 128-234 |
| Cow position: | chr6:29690183-29690289 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-281 |
| Cow position: | chr6:54084489-54084341 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 128-281 |
| Cow position: | chr6:61431633-61431786 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-304 |
| Cow position: | chr6:54879736-54879560 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 156, 166 |
| Conread position: | 128-328 |
| Cow position: | chr6:26125087-26125303 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 128-330 |
| Cow position: | chr6:53148142-53148351 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 139, 116 |
| Conread position: | 135-327 |
| Cow position: | chr6:61211835-61211640 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 140-304 |
| Cow position: | chr6:25627743-25627582 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 126 |
| Conread position: | 140-304 |
| Cow position: | chr6:56674589-56674425 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 153 |
| Conread position: | 140-315 |
| Cow position: | chr6:27636233-27636058 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 141-304 |
| Cow position: | chr6:6812356-6812520 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 141-336 |
| Cow position: | chr6:27578483-27578688 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 144-281 |
| Cow position: | chr6:55461890-55461752 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 146-281 |
| Cow position: | chr6:47169855-47169720 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-281 |
| Cow position: | chr6:32521482-32521588 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.