Cow genome map

Conread name: Ss1.1-rpigcf0_021549.5

Conread position: 282-426
Cow position: chr25:7277344-7277207 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 294-424
Cow position: chr25:26225044-26224912 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 294-438
Cow position: chr25:35052638-35052491 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 295-409
Cow position: chr25:18541960-18541844 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 295-410
Cow position: chr25:4221617-4221500 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 295-416
Cow position: chr25:13503419-13503543 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 295-416
Cow position: chr25:31762622-31762499 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 295-416
Cow position: chr25:36840382-36840505 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 29, 74

Conread position: 295-418
Cow position: chr25:17918960-17919085 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 295-419
Cow position: chr25:9615823-9615949 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 295-422
Cow position: chr25:433062-432933 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 295-422
Cow position: chr25:5474244-5474115 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 295-422
Cow position: chr25:6474101-6473972 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 295-423
Cow position: chr25:10791828-10791699 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 86

Conread position: 295-423
Cow position: chr25:13325566-13325696 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 295-423
Cow position: chr25:20133328-20133199 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 115

Conread position: 295-423
Cow position: chr25:30656660-30656533 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 51

Conread position: 295-423
Cow position: chr25:33101619-33101489 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 295-423
Cow position: chr25:33555593-33555721 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 66

Conread position: 295-424
Cow position: chr25:6258869-6259004 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 295-424
Cow position: chr25:11585504-11585635 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 295-424
Cow position: chr25:21893324-21893456 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 295-424
Cow position: chr25:36081863-36081992 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-427
Cow position: chr25:1824111-1823977 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 295-427
Cow position: chr25:13272555-13272688 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 130

Conread position: 295-427
Cow position: chr25:14513100-14513235 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 295-427
Cow position: chr25:16064878-16065012 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 119

Conread position: 295-427
Cow position: chr25:16867224-16867361 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 295-427
Cow position: chr25:17658597-17658731 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 295-427
Cow position: chr25:23779345-23779212 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 120

Conread position: 295-427
Cow position: chr25:23817854-23817721 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 127

Conread position: 295-427
Cow position: chr25:36555703-36555569 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 295-430
Cow position: chr25:23245016-23244876 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 295-430
Cow position: chr25:30816875-30817014 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 295-432
Cow position: chr25:26087505-26087648 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 56

Conread position: 295-433
Cow position: chr25:6928521-6928382 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 295-434
Cow position: chr25:7726648-7726789 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 295-435
Cow position: chr25:10218063-10217921 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 295-437
Cow position: chr25:7380853-7380710 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 27, 125

Conread position: 295-438
Cow position: chr25:17474526-17474382 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 32

Conread position: 295-438
Cow position: chr25:33311341-33311195 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 295-440
Cow position: chr25:12305262-12305409 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 295-442
Cow position: chr25:61636-61785 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 295-442
Cow position: chr25:15463573-15463722 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 108

Conread position: 295-442
Cow position: chr25:22730815-22730963 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 74

Conread position: 295-443
Cow position: chr25:7799534-7799685 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 73

Conread position: 295-445
Cow position: chr25:4009079-4009231 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 295-445
Cow position: chr25:30619050-30619201 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 48

Conread position: 295-459
Cow position: chr25:15218122-15218284 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 295-462
Cow position: chr25:33686698-33686529 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 153

Conread position: 295-466
Cow position: chr25:12064034-12064205 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 99

Conread position: 295-468
Cow position: chr25:26051888-26052064 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 19, 106

Conread position: 295-469
Cow position: chr25:18905871-18906048 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 295-471
Cow position: chr25:34242118-34241939 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 295-474
Cow position: chr25:10359612-10359800 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 48

Conread position: 295-475
Cow position: chr25:26160951-26161136 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 143

Conread position: 295-480
Cow position: chr25:12252822-12252632 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 26

Conread position: 295-483
Cow position: chr25:16921811-16921626 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 129

Conread position: 295-494
Cow position: chr25:35109283-35109081 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 178

Conread position: 295-499
Cow position: chr25:38421652-38421866 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 295-522
Cow position: chr25:21894898-21894671 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 63

Conread position: 295-540
Cow position: chr25:7012411-7012648 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 72

Conread position: 296-419
Cow position: chr25:18564474-18564598 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 45

Conread position: 296-427
Cow position: chr25:36873069-36872936 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 296-436
Cow position: chr25:20008119-20008262 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 296-438
Cow position: chr25:7216819-7216955 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 296-477
Cow position: chr25:18201939-18201759 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 46

Conread position: 296-484
Cow position: chr25:20447553-20447748 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 298-436
Cow position: chr25:5807934-5808076 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 298-438
Cow position: chr25:31514170-31514312 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 298-442
Cow position: chr25:36120487-36120633 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 299-440
Cow position: chr25:15294786-15294929 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 299-509
Cow position: chr25:13551075-13550863 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 123

Conread position: 301-427
Cow position: chr25:28187953-28187825 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 305-435
Cow position: chr25:7311395-7311268 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 306-422
Cow position: chr25:36369818-36369933 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 306-422
Cow position: chr25:36375509-36375624 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 306-488
Cow position: chr25:23016019-23016198 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 128, 137

Conread position: 307-427
Cow position: chr25:23323490-23323610 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 310-431
Cow position: chr25:14164202-14164319 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 310-436
Cow position: chr25:18491041-18491169 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 310-438
Cow position: chr25:5791714-5791585 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 310-446
Cow position: chr25:13736026-13735896 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 310-447
Cow position: chr25:11038357-11038494 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 311-416
Cow position: chr25:7546513-7546618 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 312-430
Cow position: chr25:14196868-14196984 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 313-456
Cow position: chr25:11272381-11272521 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 315-422
Cow position: chr25:7403333-7403226 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 77, 81

Conread position: 315-432
Cow position: chr25:11956812-11956928 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 103, 0

Conread position: 316-424
Cow position: chr25:12205042-12205150 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 316-521
Cow position: chr25:7012675-7012886 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 317-436
Cow position: chr25:18551324-18551205 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 98, 64

Conread position: 317-464
Cow position: chr25:21926432-21926282 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 320-416
Cow position: chr25:31732308-31732212 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 321-459
Cow position: chr25:7061242-7061100 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 323-456
Cow position: chr25:36136124-36135990 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 324-422
Cow position: chr25:27520741-27520643 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 329-444
Cow position: chr25:32907960-32908073 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 332-437
Cow position: chr25:11855524-11855420 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 337-473
Cow position: chr25:25828739-25828874 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 338-443
Cow position: chr25:7298871-7298766 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 341-521
Cow position: chr25:8222940-8223113 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 341-522
Cow position: chr25:31344061-31343872 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 128, 77

Conread position: 342-478
Cow position: chr25:12899762-12899898 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 347-509
Cow position: chr25:16316214-16316063 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 71, 0

Show alignments to all cow chromosomes.