Cow genome map
| Conread name: | Ss1.1-rpigcf0_021549.5 |
| Conread position: | 295-406 |
| Cow position: | chr26:17187029-17186920 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 295-415 |
| Cow position: | chr26:18876957-18876835 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 295-416 |
| Cow position: | chr26:7224337-7224213 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 295-419 |
| Cow position: | chr26:11672302-11672428 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 295-419 |
| Cow position: | chr26:25074722-25074848 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 295-419 |
| Cow position: | chr26:25526254-25526380 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 295-420 |
| Cow position: | chr26:29778927-29779054 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-423 |
| Cow position: | chr26:6794150-6794285 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 295-423 |
| Cow position: | chr26:12893422-12893293 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 295-423 |
| Cow position: | chr26:19671483-19671609 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 295-423 |
| Cow position: | chr26:22304374-22304244 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-423 |
| Cow position: | chr26:25225728-25225598 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 295-423 |
| Cow position: | chr26:31903172-31903301 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 295-423 |
| Cow position: | chr26:33253311-33253181 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 295-424 |
| Cow position: | chr26:7315102-7314972 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 295-427 |
| Cow position: | chr26:1325762-1325894 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 295-427 |
| Cow position: | chr26:6714295-6714163 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-427 |
| Cow position: | chr26:26294187-26294057 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 295-427 |
| Cow position: | chr26:32571298-32571434 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 295-427 |
| Cow position: | chr26:32834572-32834440 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-432 |
| Cow position: | chr26:17057683-17057823 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 295-432 |
| Cow position: | chr26:18381319-18381455 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 295-434 |
| Cow position: | chr26:23624039-23623897 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 295-438 |
| Cow position: | chr26:8811132-8811277 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-438 |
| Cow position: | chr26:9839538-9839399 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 295-438 |
| Cow position: | chr26:29664154-29664005 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-438 |
| Cow position: | chr26:32830086-32830230 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 295-442 |
| Cow position: | chr26:677975-677824 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 295-443 |
| Cow position: | chr26:24240685-24240834 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 295-445 |
| Cow position: | chr26:34580808-34580957 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 295-447 |
| Cow position: | chr26:7157601-7157442 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 295-448 |
| Cow position: | chr26:34314696-34314853 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-450 |
| Cow position: | chr26:28374438-28374281 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 295-458 |
| Cow position: | chr26:8700042-8699883 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 295-458 |
| Cow position: | chr26:30254628-30254464 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 295-459 |
| Cow position: | chr26:19774294-19774127 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-465 |
| Cow position: | chr26:17398581-17398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 295-467 |
| Cow position: | chr26:9104276-9104102 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 295-473 |
| Cow position: | chr26:9501714-9501895 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 295-474 |
| Cow position: | chr26:6865029-6865207 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 295-475 |
| Cow position: | chr26:34154139-34154321 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 295-478 |
| Cow position: | chr26:11538537-11538722 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 295-499 |
| Cow position: | chr26:22152232-22152430 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 125 |
| Conread position: | 295-521 |
| Cow position: | chr26:32863661-32863442 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 295-522 |
| Cow position: | chr26:22354418-22354656 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 295-540 |
| Cow position: | chr26:11263646-11263884 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 296-424 |
| Cow position: | chr26:16796200-16796074 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 296-424 |
| Cow position: | chr26:33392400-33392530 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 296-432 |
| Cow position: | chr26:8478864-8478728 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-445 |
| Cow position: | chr26:3706798-3706948 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 296-445 |
| Cow position: | chr26:32836245-32836395 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 298-416 |
| Cow position: | chr26:34060341-34060461 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 298-423 |
| Cow position: | chr26:31633736-31633863 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 298-427 |
| Cow position: | chr26:16435648-16435517 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 298-437 |
| Cow position: | chr26:5406987-5407128 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 298-438 |
| Cow position: | chr26:4363308-4363452 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 299-419 |
| Cow position: | chr26:13100347-13100225 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 299-419 |
| Cow position: | chr26:33567033-33566913 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 299-443 |
| Cow position: | chr26:7148296-7148151 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 299-539 |
| Cow position: | chr26:15211812-15212057 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 300-424 |
| Cow position: | chr26:32403171-32403296 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 300-493 |
| Cow position: | chr26:9099522-9099334 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 301-422 |
| Cow position: | chr26:24453896-24453776 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 303-416 |
| Cow position: | chr26:32353707-32353592 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 303-427 |
| Cow position: | chr26:14905795-14905669 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 306-471 |
| Cow position: | chr26:15599508-15599344 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 308-443 |
| Cow position: | chr26:829825-829958 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 312-416 |
| Cow position: | chr26:12807277-12807173 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 312-427 |
| Cow position: | chr26:8352993-8353108 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-437 |
| Cow position: | chr26:28202735-28202610 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-459 |
| Cow position: | chr26:32825976-32825830 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 316-423 |
| Cow position: | chr26:18231818-18231925 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 316-427 |
| Cow position: | chr26:13018361-13018253 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 316-510 |
| Cow position: | chr26:7183969-7183773 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 317-427 |
| Cow position: | chr26:28446612-28446722 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-422 |
| Cow position: | chr26:19459725-19459828 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 320-427 |
| Cow position: | chr26:6823191-6823297 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 320-482 |
| Cow position: | chr26:32565481-32565644 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 322-490 |
| Cow position: | chr26:32672394-32672227 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 156, 98 |
| Conread position: | 327-423 |
| Cow position: | chr26:26245131-26245036 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 328-445 |
| Cow position: | chr26:33691448-33691329 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 330-442 |
| Cow position: | chr26:32013950-32014062 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.