Cow genome map
| Conread name: | Ss1.1-rpldo0107_n16.5 |
| Conread position: | 299-567 |
| Cow position: | chr19:23639968-23640235 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 323-591 |
| Cow position: | chr19:14951296-14951028 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 902-1116 |
| Cow position: | chr19:14948481-14948268 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 902-1116 |
| Cow position: | chr19:23613501-23613715 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1091 |
| Cow position: | chr19:23614930-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1093 |
| Cow position: | chr19:14960071-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1094 |
| Cow position: | chr19:14959499-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 152 |
| Conread position: | 903-1104 |
| Cow position: | chr19:23649876-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1104 |
| Cow position: | chr19:23649960-23650161 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 903-1114 |
| Cow position: | chr19:14959172-14958967 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 903-1115 |
| Cow position: | chr19:14948229-14948017 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14940310-14940523 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 141, 146 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14940394-14940607 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14940478-14940691 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14948397-14948184 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 157 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14960237-14960026 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:14960321-14960110 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:23613922-23614135 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:23614090-23614303 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 156, 151 |
| Conread position: | 903-1116 |
| Cow position: | chr19:23614426-23614639 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 903-1116 |
| Cow position: | chr19:23614510-23614723 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr19:23614594-23614807 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 155 |
| Conread position: | 903-1116 |
| Cow position: | chr19:43570238-43570025 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 904-1113 |
| Cow position: | chr19:14959582-14959373 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 904-1116 |
| Cow position: | chr19:14940143-14940355 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 904-1116 |
| Cow position: | chr19:20678190-20678402 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 904-1116 |
| Cow position: | chr19:20678442-20678654 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 163, 150 |
| Conread position: | 905-1116 |
| Cow position: | chr19:14940228-14940439 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 905-1116 |
| Cow position: | chr19:14940564-14940775 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 905-1116 |
| Cow position: | chr19:20678359-20678570 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 156, 171 |
| Conread position: | 905-1116 |
| Cow position: | chr19:23597269-23597480 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 150, 154 |
| Conread position: | 905-1116 |
| Cow position: | chr19:23613418-23613631 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 142 |
| Conread position: | 905-1116 |
| Cow position: | chr19:23613838-23614051 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 905-1116 |
| Cow position: | chr19:23614008-23614219 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 157, 161 |
| Conread position: | 908-1116 |
| Cow position: | chr19:20677857-20678066 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 149 |
| Conread position: | 918-1115 |
| Cow position: | chr19:23614189-23614386 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1116 |
| Cow position: | chr19:20635548-20635350 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 127 |
| Conread position: | 918-1116 |
| Cow position: | chr19:23613347-23613547 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 918-1116 |
| Cow position: | chr19:23649555-23649753 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 136 |
| Conread position: | 918-1116 |
| Cow position: | chr19:23649807-23650005 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 919-1116 |
| Cow position: | chr19:14960389-14960192 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 920-1115 |
| Cow position: | chr19:14959651-14959455 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 921-1114 |
| Cow position: | chr19:23597367-23597562 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr19:14960137-14959942 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr19:23613604-23613799 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr19:23614696-23614891 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr19:43570136-43569941 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 923-1116 |
| Cow position: | chr19:23649728-23649921 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 934-1116 |
| Cow position: | chr19:23597214-23597396 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 934-1116 |
| Cow position: | chr19:23649403-23649585 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 935-1113 |
| Cow position: | chr19:14940678-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.