Cow genome map
| Conread name: | Ss1.1-rpldo0107_n16.5 |
| Conread position: | 228-588 |
| Cow position: | chr23:25658137-25658497 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-600 |
| Cow position: | chr23:24622817-24623187 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 249-584 |
| Cow position: | chr23:24527455-24527117 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 254-600 |
| Cow position: | chr23:24568159-24567813 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-584 |
| Cow position: | chr23:25730709-25730444 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-600 |
| Cow position: | chr23:24538699-24538421 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-600 |
| Cow position: | chr23:24648181-24648459 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-600 |
| Cow position: | chr23:25617607-25617885 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-600 |
| Cow position: | chr23:25691584-25691306 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-599 |
| Cow position: | chr23:25703107-25702844 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 341-596 |
| Cow position: | chr23:24630224-24630471 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 746-1116 |
| Cow position: | chr23:25659978-25660348 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 748-1116 |
| Cow position: | chr23:24561067-24560693 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 118 |
| Conread position: | 851-1116 |
| Cow position: | chr23:25724195-25723930 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 859-1105 |
| Cow position: | chr23:25626720-25626969 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 861-1116 |
| Cow position: | chr23:25626221-25626479 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 865-1116 |
| Cow position: | chr23:25724100-25723846 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 887-1116 |
| Cow position: | chr23:25660287-25660516 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-1114 |
| Cow position: | chr23:25626173-25626393 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 894-1096 |
| Cow position: | chr23:24560327-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1092 |
| Cow position: | chr23:24626544-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1104 |
| Cow position: | chr23:25723975-25723774 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1113 |
| Cow position: | chr23:24546842-24546632 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1113 |
| Cow position: | chr23:24547010-24546800 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24522416-24522203 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 173, 178 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24546926-24546713 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24547094-24546881 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24547262-24547049 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24560402-24560189 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24560486-24560273 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 143, 151 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24560654-24560441 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24626376-24626589 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 152, 156 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24626460-24626673 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24639620-24639833 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:24639704-24639917 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:25626599-25626812 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr23:25660219-25660432 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 904-1116 |
| Cow position: | chr23:24654102-24654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 912-1116 |
| Cow position: | chr23:25626525-25626728 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 918-1105 |
| Cow position: | chr23:24535710-24535523 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1116 |
| Cow position: | chr23:24522569-24522371 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 918-1116 |
| Cow position: | chr23:24535794-24535596 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1116 |
| Cow position: | chr23:25660486-25660684 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 919-1116 |
| Cow position: | chr23:24522486-24522287 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr23:24547160-24546965 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr23:24560552-24560357 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 921-1116 |
| Cow position: | chr23:24639554-24639749 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 921-1116 |
| Cow position: | chr23:24639806-24640001 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 922-1114 |
| Cow position: | chr23:24654204-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 923-1098 |
| Cow position: | chr23:25660407-25660582 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 930-1114 |
| Cow position: | chr23:24547319-24547135 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 930-1116 |
| Cow position: | chr23:24654044-24654230 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 115, 129 |
| Conread position: | 934-1116 |
| Cow position: | chr23:25626129-25626311 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 935-1115 |
| Cow position: | chr23:24535861-24535681 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 935-1116 |
| Cow position: | chr23:24560706-24560525 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 935-1116 |
| Cow position: | chr23:24626324-24626505 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.