Cow genome map
| Conread name: | Ss1.1-rpldo0107_n16.5 |
| Conread position: | 233-550 |
| Cow position: | chr25:4663752-4663438 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 304-600 |
| Cow position: | chr25:321836-322131 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 288, 15 |
| Conread position: | 307-571 |
| Cow position: | chr25:33122282-33122545 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 314-555 |
| Cow position: | chr25:34751259-34751500 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-567 |
| Cow position: | chr25:421936-422189 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-600 |
| Cow position: | chr25:22223920-22224205 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 317-581 |
| Cow position: | chr25:3673390-3673654 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-567 |
| Cow position: | chr25:34467682-34467930 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-600 |
| Cow position: | chr25:33142815-33143093 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 335-561 |
| Cow position: | chr25:339502-339728 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 174 |
| Conread position: | 335-600 |
| Cow position: | chr25:34745087-34744822 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 894-1116 |
| Cow position: | chr25:34714092-34714314 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 902-1116 |
| Cow position: | chr25:34447004-34447218 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 5 |
| Conread position: | 903-1094 |
| Cow position: | chr25:327074-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 903-1097 |
| Cow position: | chr25:33156986-33156792 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1105 |
| Cow position: | chr25:34433003-34433205 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1115 |
| Cow position: | chr25:22235980-22236192 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 903-1115 |
| Cow position: | chr25:34769469-34769257 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1115 |
| Cow position: | chr25:34769637-34769425 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr25:326990-327203 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr25:23420450-23420663 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 903-1116 |
| Cow position: | chr25:33157406-33157193 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr25:33298630-33298843 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 141, 155 |
| Conread position: | 903-1116 |
| Cow position: | chr25:34447257-34447470 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr25:34769973-34769760 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1116 |
| Cow position: | chr25:34770057-34769844 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 904-1115 |
| Cow position: | chr25:23420535-23420746 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 905-1116 |
| Cow position: | chr25:34769803-34769592 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 906-1116 |
| Cow position: | chr25:33145168-33145378 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 908-1116 |
| Cow position: | chr25:33127957-33128166 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 199 |
| Conread position: | 910-1116 |
| Cow position: | chr25:33127708-33127914 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1089 |
| Cow position: | chr25:33145264-33145435 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1116 |
| Cow position: | chr25:23420381-23420579 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 918-1116 |
| Cow position: | chr25:33127884-33128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1116 |
| Cow position: | chr25:33157223-33157025 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 919-1116 |
| Cow position: | chr25:34447355-34447554 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 921-1115 |
| Cow position: | chr25:34769535-34769341 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 147, 133 |
| Conread position: | 921-1116 |
| Cow position: | chr25:34769705-34769508 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 921-1116 |
| Cow position: | chr25:34769873-34769676 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 929-1104 |
| Cow position: | chr25:33157464-33157289 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 935-1116 |
| Cow position: | chr25:34447205-34447386 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 935-1116 |
| Cow position: | chr25:34447457-34447638 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 940-1116 |
| Cow position: | chr25:23420319-23420495 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 112, 118 |
| Conread position: | 940-1116 |
| Cow position: | chr25:34770104-34769928 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.