Cow genome map

Conread name: Ss1.1-rpldo0109_h4.5

Conread position: 1-377
Cow position: chr14:680899-681275 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 223
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 292, 266

Conread position: 1-414
Cow position: chr14:3080086-3079673 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 252
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 294, 281

Conread position: 1-425
Cow position: chr14:3155413-3155837 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 257
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 279, 264

Conread position: 1-456
Cow position: chr14:25784272-25784727 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 270
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 298, 278

Conread position: 1-496
Cow position: chr14:3127766-3127271 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 117

Conread position: 1-504
Cow position: chr14:25836723-25837226 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 297
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 204, 219

Conread position: 1-506
Cow position: chr14:3156238-3156734 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 303
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 314, 251

Conread position: 1-512
Cow position: chr14:25794674-25794162 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 298
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 79, 85

Conread position: 1-540
Cow position: chr14:25783684-25784223 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 121

Conread position: 1-541
Cow position: chr14:3101248-3100713 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 326
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 41, 50

Conread position: 1-542
Cow position: chr14:25784020-25784561 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-543
Cow position: chr14:447593-448135 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 135

Conread position: 1-543
Cow position: chr14:25836303-25836845 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 195

Conread position: 1-543
Cow position: chr14:25836471-25837013 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 337
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 132, 115

Conread position: 1-543
Cow position: chr14:25859440-25859982 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 334
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 9

Conread position: 1-543
Cow position: chr14:25876491-25877033 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 338
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 66

Conread position: 1-543
Cow position: chr14:25895118-25895660 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 311
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 121

Conread position: 1-543
Cow position: chr14:25895622-25896164 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 338
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 199, 237

Conread position: 1-544
Cow position: chr14:3080842-3080299 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 281

Conread position: 1-545
Cow position: chr14:3080254-3079710 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 204

Conread position: 1-548
Cow position: chr14:25836051-25836598 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 330
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 214, 219

Conread position: 1-548
Cow position: chr14:25836387-25836934 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 325
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 139

Conread position: 1-553
Cow position: chr14:25836135-25836687 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 336
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 62

Conread position: 1-554
Cow position: chr14:25859860-25860413 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 327
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 139

Conread position: 1-554
Cow position: chr14:25860112-25860665 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 334
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 49, 59

Conread position: 1-554
Cow position: chr14:25895874-25896425 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 329
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 293, 281

Conread position: 1-570
Cow position: chr14:3061233-3060664 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 325
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 211, 219

Conread position: 1-570
Cow position: chr14:3080338-3079769 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 268

Conread position: 1-570
Cow position: chr14:3080422-3079853 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-573
Cow position: chr14:433814-434386 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 324
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-573
Cow position: chr14:25895538-25896110 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 338
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 187, 204

Conread position: 1-574
Cow position: chr14:680647-681221 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 346
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 201, 195

Conread position: 1-574
Cow position: chr14:25783600-25784173 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 89

Conread position: 1-574
Cow position: chr14:25783936-25784509 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 353
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 220, 196

Conread position: 1-574
Cow position: chr14:25794758-25794184 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 341
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 41

Conread position: 1-576
Cow position: chr14:3080590-3080015 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 357
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 132, 121

Conread position: 1-576
Cow position: chr14:3101080-3100510 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 341
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 110, 23

Conread position: 1-576
Cow position: chr14:3127850-3127275 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 66

Conread position: 1-576
Cow position: chr14:3127934-3127359 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 440, 436

Conread position: 1-576
Cow position: chr14:3128102-3127527 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 352
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 181, 204

Conread position: 1-576
Cow position: chr14:3155902-3156477 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 146

Conread position: 1-576
Cow position: chr14:25860196-25860771 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 341
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 115, 137

Conread position: 1-576
Cow position: chr14:25877247-25877822 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 343
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 566, 544

Conread position: 2-500
Cow position: chr14:3100832-3100336 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 311
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 93, 85

Conread position: 2-512
Cow position: chr14:3080169-3079657 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 317
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 270, 262

Conread position: 2-543
Cow position: chr14:25835716-25836257 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 316
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 82, 55

Conread position: 2-543
Cow position: chr14:25836640-25837181 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 332
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 72, 65

Conread position: 2-548
Cow position: chr14:25877080-25877626 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 331
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 82, 77

Conread position: 2-553
Cow position: chr14:25894951-25895502 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 328
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 146, 138

Conread position: 2-576
Cow position: chr14:25784105-25784679 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 350
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 93, 88

Conread position: 2-576
Cow position: chr14:25794841-25794266 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 345
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 141, 120

Conread position: 4-545
Cow position: chr14:680734-681275 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 330
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 124, 132

Conread position: 8-411
Cow position: chr14:447852-448255 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 240
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 201, 169

Conread position: 8-545
Cow position: chr14:3128179-3127642 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 333
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 67, 61

Conread position: 10-574
Cow position: chr14:25876416-25876980 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 356
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 46

Conread position: 10-576
Cow position: chr14:25783441-25784007 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 339
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 29

Conread position: 27-576
Cow position: chr14:3080901-3080351 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 343
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 21

Conread position: 51-541
Cow position: chr14:3100867-3100377 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 294
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 148, 121

Conread position: 53-573
Cow position: chr14:3080958-3080438 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 33

Conread position: 59-546
Cow position: chr14:447567-448054 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 298
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 172, 168

Conread position: 60-576
Cow position: chr14:25795203-25794687 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 303
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 73

Conread position: 62-503
Cow position: chr14:3156047-3156488 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 278
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 121, 139

Conread position: 62-542
Cow position: chr14:25795033-25794553 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 300
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 153, 161

Conread position: 73-542
Cow position: chr14:25910823-25911292 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 289
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 70, 49

Conread position: 73-558
Cow position: chr14:25859680-25860165 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 295
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 56, 43

Conread position: 81-540
Cow position: chr14:25784268-25784727 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 275
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 213, 198

Conread position: 83-509
Cow position: chr14:3155411-3155837 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 39

Conread position: 83-546
Cow position: chr14:25836049-25836512 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 286
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 38

Conread position: 83-558
Cow position: chr14:25876741-25877216 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 292
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 124, 148

Conread position: 84-549
Cow position: chr14:25783935-25784400 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 289
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 210, 195

Conread position: 107-576
Cow position: chr14:3128164-3127695 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 289
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 90

Conread position: 132-547
Cow position: chr14:25910800-25911213 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 270
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 99, 22

Conread position: 146-542
Cow position: chr14:25859333-25859729 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 237
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 112

Conread position: 146-543
Cow position: chr14:25894927-25895324 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 251
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 137, 112

Conread position: 146-550
Cow position: chr14:3101438-3101036 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 263
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 76, 64

Conread position: 146-558
Cow position: chr14:25859249-25859661 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 256
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 65

Conread position: 158-570
Cow position: chr14:447582-447994 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 269
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 25, 41

Conread position: 167-541
Cow position: chr14:3100835-3100461 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 232
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 103, 88

Conread position: 197-545
Cow position: chr14:3061710-3061361 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 71

Conread position: 210-569
Cow position: chr14:3128145-3127786 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 230
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 105, 91

Conread position: 221-549
Cow position: chr14:25783316-25783644 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 211
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 48, 37

Conread position: 221-570
Cow position: chr14:3155465-3155814 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 229
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 169, 165

Conread position: 228-576
Cow position: chr14:447568-447916 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 222
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 230-547
Cow position: chr14:25894846-25895160 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 203
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 23

Conread position: 230-574
Cow position: chr14:25876384-25876728 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 147, 160

Conread position: 230-576
Cow position: chr14:25859249-25859595 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 219
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 85, 73

Conread position: 246-573
Cow position: chr14:3155406-3155733 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 271-576
Cow position: chr14:3080992-3080687 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 33

Conread position: 292-542
Cow position: chr14:3061698-3061448 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 293-569
Cow position: chr14:434022-434298 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 148, 144

Conread position: 297-544
Cow position: chr14:3061189-3060942 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-541
Cow position: chr14:3061260-3061029 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 152
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 311-543
Cow position: chr14:3101441-3101210 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 78

Conread position: 312-568
Cow position: chr14:680370-680626 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 237, 246

Conread position: 314-548
Cow position: chr14:25895599-25895833 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 314-554
Cow position: chr14:25910896-25911136 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 314-559
Cow position: chr14:25836112-25836357 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 314-576
Cow position: chr14:25783325-25783587 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 158, 144

Show alignments to all cow chromosomes.