Cow genome map


           Conread name:
           Ss1.1-rpldo0109_h4.5
        

               Conread position:
               1-377
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               292, 266
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               294, 281
               

               Conread position:
               1-425
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               279, 264
               

               Conread position:
               1-456
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               298, 278
               

               Conread position:
               1-496
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 117
               

               Conread position:
               1-504
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               297
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               204, 219
               

               Conread position:
               1-506
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               314, 251
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               298
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               79, 85
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 121
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               326
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               41, 50
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 135
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 195
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               132, 115
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               334
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               14, 9
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               338
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               73, 66
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               131, 121
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               338
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               199, 237
               

               Conread position:
               1-544
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 281
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 204
               

               Conread position:
               1-548
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               330
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               214, 219
               

               Conread position:
               1-548
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               146, 139
               

               Conread position:
               1-553
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               336
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               39, 62
               

               Conread position:
               1-554
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               1-554
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               334
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               49, 59
               

               Conread position:
               1-554
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               329
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               293, 281
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               325
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               211, 219
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 268
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-573
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               324
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-573
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               338
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               187, 204
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               346
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               201, 195
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 89
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               353
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               220, 196
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               341
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               357
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               132, 121
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               341
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               110, 23
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 66
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 436
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               352
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               181, 204
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 146
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               341
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               115, 137
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               343
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               566, 544
               

               Conread position:
               2-500
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               311
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               93, 85
               

               Conread position:
               2-512
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               317
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               270, 262
               

               Conread position:
               2-543
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               316
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               2-543
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               332
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               2-548
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               331
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               82, 77
               

               Conread position:
               2-553
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               328
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               146, 138
               

               Conread position:
               2-576
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               350
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 88
               

               Conread position:
               2-576
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               345
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               141, 120
               

               Conread position:
               4-545
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               330
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               124, 132
               

               Conread position:
               8-411
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               201, 169
               

               Conread position:
               8-545
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               333
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               67, 61
               

               Conread position:
               10-574
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               356
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               53, 46
               

               Conread position:
               10-576
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               339
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               44, 29
               

               Conread position:
               27-576
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               343
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               8, 21
               

               Conread position:
               51-541
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               148, 121
               

               Conread position:
               53-573
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 33
               

               Conread position:
               59-546
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               298
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               172, 168
               

               Conread position:
               60-576
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               303
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               62, 73
               

               Conread position:
               62-503
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               62-542
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               153, 161
               

               Conread position:
               73-542
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               289
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               70, 49
               

               Conread position:
               73-558
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               295
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               81-540
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               213, 198
               

               Conread position:
               83-509
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               83-546
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               286
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               47, 38
               

               Conread position:
               83-558
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               124, 148
               

               Conread position:
               84-549
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               289
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               210, 195
               

               Conread position:
               107-576
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               102, 90
               

               Conread position:
               132-547
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               99, 22
               

               Conread position:
               146-542
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               123, 112
               

               Conread position:
               146-543
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               137, 112
               

               Conread position:
               146-550
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               263
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               76, 64
               

               Conread position:
               146-558
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               158-570
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               269
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               25, 41
               

               Conread position:
               167-541
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               103, 88
               

               Conread position:
               197-545
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               6, 71
               

               Conread position:
               210-569
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 91
               

               Conread position:
               221-549
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               48, 37
               

               Conread position:
               221-570
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               169, 165
               

               Conread position:
               228-576
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               230-547
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 23
               

               Conread position:
               230-574
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               147, 160
               

               Conread position:
               230-576
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               85, 73
               

               Conread position:
               246-573
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               271-576
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               22, 33
               

               Conread position:
               292-542
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               293-569
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               148, 144
               

               Conread position:
               297-544
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               310-541
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               311-543
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               66, 78
               

               Conread position:
               312-568
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               237, 246
               

               Conread position:
               314-548
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-554
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-559
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-576
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               158, 144
               
Show alignments to all cow chromosomes.