Cow genome map

Conread name: Ss1.1-rpldo0109_h4.5

Conread position: 1-453
Cow position: chr17:22452125-22451673 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 269
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 46

Conread position: 1-512
Cow position: chr17:22473422-22473934 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 312
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 219, 204

Conread position: 1-521
Cow position: chr17:22499055-22498535 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 317
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 161, 170

Conread position: 1-533
Cow position: chr17:22452209-22451677 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 327
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 124, 118

Conread position: 1-539
Cow position: chr17:22589930-22589392 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 329
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 68

Conread position: 1-541
Cow position: chr17:22552092-22551552 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 331
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 127, 132

Conread position: 1-541
Cow position: chr17:22553100-22552560 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 329
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 127, 132

Conread position: 1-547
Cow position: chr17:22499139-22498593 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 331
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 182, 207

Conread position: 1-567
Cow position: chr17:22499307-22498741 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 341
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 206, 219

Conread position: 1-570
Cow position: chr17:41441035-41440466 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 332
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 198, 166

Conread position: 1-573
Cow position: chr17:22552680-22552108 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 363
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 140, 146

Conread position: 1-575
Cow position: chr17:22499223-22498649 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 342
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 177, 200

Conread position: 1-575
Cow position: chr17:22552848-22552274 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 360
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 45, 87

Conread position: 1-575
Cow position: chr17:22590014-22589440 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 343
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 121, 143

Conread position: 1-576
Cow position: chr17:22473338-22473913 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 353
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 125, 115

Conread position: 1-576
Cow position: chr17:22552512-22551937 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 196

Conread position: 2-529
Cow position: chr17:22552007-22551480 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 318
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 139, 145

Conread position: 2-573
Cow position: chr17:22552259-22551688 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 352
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 126, 131

Conread position: 3-543
Cow position: chr17:22553013-22552474 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 337
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 98, 5

Conread position: 5-541
Cow position: chr17:22499387-22498851 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 317
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 295, 277

Conread position: 5-542
Cow position: chr17:22452373-22451836 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 142

Conread position: 27-543
Cow position: chr17:22552318-22551802 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 311
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 100, 89

Conread position: 29-558
Cow position: chr17:22452265-22451736 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 87

Conread position: 52-576
Cow position: chr17:22452410-22451886 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 70

Conread position: 74-543
Cow position: chr17:22473327-22473796 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 290
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 128, 145

Conread position: 83-573
Cow position: chr17:22553102-22552612 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 298
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 46, 39

Conread position: 97-543
Cow position: chr17:22590254-22589808 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 277
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 86, 102

Conread position: 104-570
Cow position: chr17:41441100-41440634 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 279
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 233, 218

Conread position: 145-573
Cow position: chr17:22499331-22498903 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 253
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 297, 292

Conread position: 219-575
Cow position: chr17:22452411-22452055 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 227
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 63

Conread position: 221-542
Cow position: chr17:22473306-22473627 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 195
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 230-570
Cow position: chr17:22499330-22498990 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 231-541
Cow position: chr17:22553122-22552812 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 199
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 65, 51

Conread position: 269-576
Cow position: chr17:22499375-22499068 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 193
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 290-544
Cow position: chr17:44467900-44468155 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 314-541
Cow position: chr17:22589449-22589222 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 72, 76

Conread position: 314-575
Cow position: chr17:22590121-22589860 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 127, 123

Conread position: 338-541
Cow position: chr17:41441118-41440915 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.