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Cow genome map

           
Conread name:
           
Ss1.1-rpldo0109_h4.5
        

               
Conread position:
               
1-370
               

               
Cow position:
               
chr18:49032369-49032000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
213, 219
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr18:43119898-43119518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
209, 196
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr18:43022394-43021973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr18:14453283-14452861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 115
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr18:51368177-51367724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
198, 182
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr18:50083791-50084265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 135
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr18:49032537-49032045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:14454015-14453521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
279, 257
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:42674896-42674402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
121, 146
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:42984967-42984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:44240350-44240844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:44398014-44397520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 281
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:51874229-51874723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
221, 204
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr18:55066853-55066359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr18:42744292-42743789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
144, 122
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr18:43048723-43048222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
218, 196
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr18:44184461-44183956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
140, 146
               

               
Conread position:
               
1-510
               

               
Cow position:
               
chr18:50271634-50272143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
191, 175
               

               
Conread position:
               
1-510
               

               
Cow position:
               
chr18:51367841-51367333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr18:40324459-40323949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
111, 131
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr18:56316558-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
214, 196
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr18:1418091-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 146
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr18:41948839-41948328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
300, 281
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr18:42827409-42827922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 144
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr18:42792397-42792912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
1-517
               

               
Cow position:
               
chr18:33064093-33063576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 146
               

               
Conread position:
               
1-518
               

               
Cow position:
               
chr18:43168049-43168564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
1-518
               

               
Cow position:
               
chr18:51752078-51751560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
268, 257
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr18:52447785-52448305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 123
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr18:51400621-51401141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 136
               

               
Conread position:
               
1-528
               

               
Cow position:
               
chr18:56329342-56328816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 281
               

               
Conread position:
               
1-534
               

               
Cow position:
               
chr18:49033209-49032676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 196
               

               
Conread position:
               
1-534
               

               
Cow position:
               
chr18:52012102-52011569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
134, 121
               

               
Conread position:
               
1-535
               

               
Cow position:
               
chr18:50099400-50099934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
1-535
               

               
Cow position:
               
chr18:51969514-51970037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-535
               

               
Cow position:
               
chr18:52428394-52428928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
144, 122
               

               
Conread position:
               
1-535
               

               
Cow position:
               
chr18:52433575-52434109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
191, 185
               

               
Conread position:
               
1-535
               

               
Cow position:
               
chr18:52447365-52447899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 221
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr18:53635535-53634999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 268
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr18:56494017-56494551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:33064849-33064310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 146
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:40306258-40306797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:41198000-41198539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
204, 219
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:42744460-42743921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 122
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:42792145-42792684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
127, 138
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:43175351-43174812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
203, 196
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:44154362-44153830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 131
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:51789216-51788678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
230, 216
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr18:51789552-51789013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
296, 290
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:41197580-41198120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
132, 115
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:41198084-41198624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
128, 121
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:41198168-41198708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
189, 185
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:42792313-42792853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:43093497-43092957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
125, 115
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:43093581-43093041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:50099232-50099772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:50246250-50246790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 89
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr18:50848676-50849216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:33093101-33092560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 9
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:42791893-42792434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:43093329-43092789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 130
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:50271466-50272007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 138
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:50848844-50849385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
127, 136
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:51400537-51401078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
216, 175
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr18:56128630-56129171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
133, 121
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:33064177-33063635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:40086257-40085724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
206, 41
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:42675232-42674690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 281
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:42724499-42723957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 141
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:42960294-42959752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:43022562-43022020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:43167965-43168507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:44240098-44240640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:50281763-50282305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:51839388-51838846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
213, 171
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:52012186-52011644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:53560267-53560805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:55523649-55524191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
251, 260
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:56247640-56247108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
182, 127
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:56316306-56316848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr18:56330014-56329472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 188
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr18:33064429-33063886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
125, 136
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr18:52447533-52448076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 86
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr18:56128294-56128837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
479, 469
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr18:40324795-40324251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
135, 144
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr18:49022317-49022859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr18:50848424-50848968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
177, 204
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr18:53636039-53635495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
127, 132
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr18:56128126-56128670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr18:44239846-44240391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
121, 129
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr18:51789300-51788755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
314, 305
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr18:55067105-55066560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 115
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr18:49032957-49032411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 194
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr18:51812543-51811997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr18:52427806-52428352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
185, 170
               

               
Conread position:
               
1-551
               

               
Cow position:
               
chr18:56247724-56247181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 121
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr18:51400369-51400921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr18:44240266-44240819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
1-558
               

               
Cow position:
               
chr18:42744712-42744155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
1-567
               

               
Cow position:
               
chr18:56128462-56129028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
287, 266
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chr18:53610378-53609811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
204, 218
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chr18:53635703-53635136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
288, 268
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chr18:53635871-53635304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
476, 482
               

               
Conread position:
               
1-569
               

               
Cow position:
               
chr18:55497617-55497049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
224, 214
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:49022735-49023304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 201
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:49032705-49032136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 194
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:50031061-50030490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:53610462-53609893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
182, 201
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:56316474-56317043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
210, 196
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr18:56329846-56329277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 222
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr18:40306762-40307333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
182, 195
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr18:56316054-56316625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 90
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr18:40086847-40086273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr18:53635619-53635047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
146, 141
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr18:56316222-56316794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
203, 195
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chr18:44398350-44397777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 281
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chr18:53586658-53586085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chr18:53635955-53635382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:42837679-42837105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 122
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:43093905-43093343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
139, 146
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:43167881-43168455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 85
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:50059450-50058876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 132
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:56329426-56328852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 216
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr18:56329930-56329356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 121
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:14453931-14453356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
203, 196
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:33064513-33063938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
296, 290
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:33064933-33064358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
138, 146
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:40306594-40307169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
224, 214
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:40324627-40324052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 219
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:40324711-40324136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
209, 196
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:41197748-41198323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 218
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:41949007-41948432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 281
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42674980-42674405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 213
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42675064-42674489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42675148-42674573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 213
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42675316-42674741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 200
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42960210-42959644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42985135-42984560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
206, 196
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:42985471-42984896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 122
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43022814-43022239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
220, 196
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43093413-43092838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43120234-43119659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43167797-43168372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
185, 191
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43175183-43174608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 115
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43175267-43174692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
395, 386
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:43175519-43174944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
143, 122
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:44184629-44184054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
220, 211
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:44184713-44184138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:44184881-44184306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 196
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:44239762-44240337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:44398098-44397523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 219
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:49032789-49032214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 281
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:49032873-49032298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 118
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:49033041-49032466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 281
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:49033293-49032718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 382
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:49033377-49032802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 121
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:50848760-50849335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:51368093-51367519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
198, 185
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:51765657-51765082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:51812627-51812052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
128, 121
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52012437-52011863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52433155-52433730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
262, 253
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52447029-52447604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52447449-52448024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 89
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52447617-52448192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 221
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:52447701-52448276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 89
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:56316138-56316713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
132, 121
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:56329510-56328935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 281
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:56329678-56329103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 382
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr18:56330182-56329607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr18:14453198-14452855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
216, 200
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr18:51812374-51811907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 140
               

               
Conread position:
               
2-498
               

               
Cow position:
               
chr18:49022820-49023316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr18:41198253-41198758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
200, 209
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr18:50281848-50282353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
185, 174
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr18:50295362-50295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
2-508
               

               
Cow position:
               
chr18:40075197-40075703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
88, 97
               

               
Conread position:
               
2-522
               

               
Cow position:
               
chr18:43175014-43174494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 205
               

               
Conread position:
               
2-535
               

               
Cow position:
               
chr18:54979650-54980183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
126, 142
               

               
Conread position:
               
2-540
               

               
Cow position:
               
chr18:40306427-40306965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
211, 216
               

               
Conread position:
               
2-540
               

               
Cow position:
               
chr18:51367924-51367387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
128, 114
               

               
Conread position:
               
2-540
               

               
Cow position:
               
chr18:55018222-55018761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
210, 195
               

               
Conread position:
               
2-541
               

               
Cow position:
               
chr18:50048880-50048342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
2-541
               

               
Cow position:
               
chr18:50059113-50058574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
114, 131
               

               
Conread position:
               
2-541
               

               
Cow position:
               
chr18:50083708-50084247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 134
               

               
Conread position:
               
2-542
               

               
Cow position:
               
chr18:42791474-42792014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
304, 300
               

               
Conread position:
               
2-543
               

               
Cow position:
               
chr18:41197833-41198374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
2-543
               

               
Cow position:
               
chr18:42791978-42792519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
124, 120
               

               
Conread position:
               
2-543
               

               
Cow position:
               
chr18:50246000-50246540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 6
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chr18:43175098-43174556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 215
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chr18:55066936-55066394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
2-545
               

               
Cow position:
               
chr18:49033124-49032581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 119
               

               
Conread position:
               
2-545
               

               
Cow position:
               
chr18:50848928-50849472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 132
               

               
Conread position:
               
2-545
               

               
Cow position:
               
chr18:54967125-54967668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
220, 200
               

               
Conread position:
               
2-546
               

               
Cow position:
               
chr18:40075029-40075573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 84
               

               
Conread position:
               
2-546
               

               
Cow position:
               
chr18:43093664-43093120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 111
               

               
Conread position:
               
2-547
               

               
Cow position:
               
chr18:1418008-1418553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 131
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr18:42744375-42743807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 114
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr18:53586573-53586005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
136, 131
               

               
Conread position:
               
2-572
               

               
Cow position:
               
chr18:55067020-55066450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:41949258-41948686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
186, 206
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:44398265-44397693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 197
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:49032620-49032048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 119
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:53560184-53560757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
120, 135
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:40086340-40085776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
304, 121
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:40086598-40086020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:41197665-41198239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 218
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:41949090-41948516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:42744543-42743969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 224
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:42791726-42792300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
212, 228
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:42837762-42837188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 388
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:44253549-44252989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 88
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:44398181-44397607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 280
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr18:55523482-55524056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
4-534
               

               
Cow position:
               
chr18:54993248-54993778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
4-535
               

               
Cow position:
               
chr18:55018140-55018671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 141
               

               
Conread position:
               
4-543
               

               
Cow position:
               
chr18:53559934-53560473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 143
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr18:53586487-53585948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 195
               

               
Conread position:
               
4-545
               

               
Cow position:
               
chr18:54992828-54993369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
179, 201
               

               
Conread position:
               
4-545
               

               
Cow position:
               
chr18:56493852-56494393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
218, 213
               

               
Conread position:
               
4-573
               

               
Cow position:
               
chr18:56329591-56329022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 185
               

               
Conread position:
               
5-541
               

               
Cow position:
               
chr18:41197500-41198036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 111
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chr18:53509499-53510037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chr18:53525953-53526490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
5-576
               

               
Cow position:
               
chr18:41948919-41948348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
5-576
               

               
Cow position:
               
chr18:50848344-50848915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 194
               

               
Conread position:
               
5-576
               

               
Cow position:
               
chr18:51368509-51367938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
293, 281
               

               
Conread position:
               
5-576
               

               
Cow position:
               
chr18:52433243-52433814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
187, 181
               

               
Conread position:
               
7-576
               

               
Cow position:
               
chr18:51839466-51838897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 140
               

               
Conread position:
               
8-519
               

               
Cow position:
               
chr18:51839297-51838786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-531
               

               
Cow position:
               
chr18:49021579-49022103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
506, 0
               

               
Conread position:
               
8-540
               

               
Cow position:
               
chr18:50848515-50849047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 131
               

               
Conread position:
               
8-540
               

               
Cow position:
               
chr18:54979572-54980104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 128
               

               
Conread position:
               
8-542
               

               
Cow position:
               
chr18:42790976-42791510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
174, 191
               

               
Conread position:
               
8-542
               

               
Cow position:
               
chr18:50848599-50849133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
8-543
               

               
Cow position:
               
chr18:42985548-42985013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 271
               

               
Conread position:
               
8-544
               

               
Cow position:
               
chr18:40324536-40324000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 215
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr18:55017892-55018451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
8-576
               

               
Cow position:
               
chr18:42837840-42837272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
459, 453
               

               
Conread position:
               
9-542
               

               
Cow position:
               
chr18:50049214-50048677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
9-576
               

               
Cow position:
               
chr18:42791313-42791880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
174, 205
               

               
Conread position:
               
10-576
               

               
Cow position:
               
chr18:41949334-41948768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-576
               

               
Cow position:
               
chr18:56493772-56494340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
13-422
               

               
Cow position:
               
chr18:50246430-50246839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
14-576
               

               
Cow position:
               
chr18:49022414-49022974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
20-542
               

               
Cow position:
               
chr18:50083306-50083828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
103, 119
               

               
Conread position:
               
20-542
               

               
Cow position:
               
chr18:50099167-50099689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
20-543
               

               
Cow position:
               
chr18:50099839-50100360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
96, 116
               

               
Conread position:
               
20-549
               

               
Cow position:
               
chr18:43175584-43175055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 177
               

               
Conread position:
               
20-570
               

               
Cow position:
               
chr18:56128397-56128947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
108, 115
               

               
Conread position:
               
20-575
               

               
Cow position:
               
chr18:50059599-50059044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
20-576
               

               
Cow position:
               
chr18:44398415-44397859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 262
               

               
Conread position:
               
29-540
               

               
Cow position:
               
chr18:51400314-51400824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
176, 12
               

               
Conread position:
               
29-540
               

               
Cow position:
               
chr18:51969374-51969874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
265, 229
               

               
Conread position:
               
29-576
               

               
Cow position:
               
chr18:42792089-42792636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
93, 104
               

               
Conread position:
               
32-576
               

               
Cow position:
               
chr18:40324929-40324388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
33-576
               

               
Cow position:
               
chr18:51969060-51969585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
166, 147
               

               
Conread position:
               
34-576
               

               
Cow position:
               
chr18:51839523-51838981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
93, 99
               

               
Conread position:
               
35-535
               

               
Cow position:
               
chr18:51789602-51789102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
259, 247
               

               
Conread position:
               
35-540
               

               
Cow position:
               
chr18:51812761-51812256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
167, 185
               

               
Conread position:
               
35-576
               

               
Cow position:
               
chr18:51400236-51400776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
39-570
               

               
Cow position:
               
chr18:51813012-51812478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
5, 48
               

               
Conread position:
               
41-540
               

               
Cow position:
               
chr18:49022607-49023106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 158
               

               
Conread position:
               
45-540
               

               
Cow position:
               
chr18:43023106-43022611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
47-576
               

               
Cow position:
               
chr18:41949381-41948852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
158, 173
               

               
Conread position:
               
48-576
               

               
Cow position:
               
chr18:50271429-50271957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
52-540
               

               
Cow position:
               
chr18:51789669-51789181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
52-540
               

               
Cow position:
               
chr18:51812828-51812340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
52-576
               

               
Cow position:
               
chr18:51789837-51789313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
53-519
               

               
Cow position:
               
chr18:52428530-52428996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
139, 133
               

               
Conread position:
               
53-519
               

               
Cow position:
               
chr18:52433711-52434177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
139, 133
               

               
Conread position:
               
53-540
               

               
Cow position:
               
chr18:50271602-50272089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
53-541
               

               
Cow position:
               
chr18:50022346-50021855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
167, 152
               

               
Conread position:
               
53-542
               

               
Cow position:
               
chr18:50048914-50048425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 143
               

               
Conread position:
               
53-543
               

               
Cow position:
               
chr18:50083675-50084165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
220, 216
               

               
Conread position:
               
53-576
               

               
Cow position:
               
chr18:43120266-43119743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
133, 138
               

               
Conread position:
               
53-576
               

               
Cow position:
               
chr18:52012468-52011947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
53-576
               

               
Cow position:
               
chr18:52447333-52447856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
75, 80
               

               
Conread position:
               
54-545
               

               
Cow position:
               
chr18:50059313-50058822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 79
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr18:50059644-50059163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 74
               

               
Conread position:
               
60-540
               

               
Cow position:
               
chr18:51812400-51811921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
471, 0
               

               
Conread position:
               
60-540
               

               
Cow position:
               
chr18:55018028-55018508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
68, 84
               

               
Conread position:
               
60-576
               

               
Cow position:
               
chr18:42675341-42674825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 142
               

               
Conread position:
               
60-576
               

               
Cow position:
               
chr18:42790944-42791460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
61-576
               

               
Cow position:
               
chr18:52428118-52428633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
131, 125
               

               
Conread position:
               
61-576
               

               
Cow position:
               
chr18:52428370-52428885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
131, 125
               

               
Conread position:
               
62-540
               

               
Cow position:
               
chr18:44253741-44253276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
62-540
               

               
Cow position:
               
chr18:51400514-51400992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
169, 165
               

               
Conread position:
               
62-545
               

               
Cow position:
               
chr18:50083516-50083999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 71
               

               
Conread position:
               
62-570
               

               
Cow position:
               
chr18:40074921-40075429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
73-542
               

               
Cow position:
               
chr18:54992645-54993114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
74-507
               

               
Cow position:
               
chr18:43048734-43048303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
74-540
               

               
Cow position:
               
chr18:51752089-51751623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
199, 184
               

               
Conread position:
               
74-543
               

               
Cow position:
               
chr18:53509232-53509701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
74-543
               

               
Cow position:
               
chr18:53525686-53526155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
74-574
               

               
Cow position:
               
chr18:54979890-54980390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
74-576
               

               
Cow position:
               
chr18:41197989-41198491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
61, 73
               

               
Conread position:
               
81-543
               

               
Cow position:
               
chr18:43119986-43119524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
139, 131
               

               
Conread position:
               
81-576
               

               
Cow position:
               
chr18:42744548-42744053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
478, 483
               

               
Conread position:
               
81-576
               

               
Cow position:
               
chr18:44154453-44153956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
79, 469
               

               
Conread position:
               
81-576
               

               
Cow position:
               
chr18:44240262-44240757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
82-576
               

               
Cow position:
               
chr18:49022732-49023226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
212, 191
               

               
Conread position:
               
83-507
               

               
Cow position:
               
chr18:51752164-51751740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chr18:50250922-50251375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
83-541
               

               
Cow position:
               
chr18:56316052-56316510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 93
               

               
Conread position:
               
83-543
               

               
Cow position:
               
chr18:51969344-51969802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
218, 199
               

               
Conread position:
               
83-558
               

               
Cow position:
               
chr18:56330184-56329709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
361, 354
               

               
Conread position:
               
83-559
               

               
Cow position:
               
chr18:55008560-55009038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 226
               

               
Conread position:
               
83-576
               

               
Cow position:
               
chr18:42744714-42744221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 137
               

               
Conread position:
               
83-576
               

               
Cow position:
               
chr18:42837933-42837440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
132, 140
               

               
Conread position:
               
84-545
               

               
Cow position:
               
chr18:49033378-49032917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-550
               

               
Cow position:
               
chr18:52433069-52433536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
84-576
               

               
Cow position:
               
chr18:44254051-44253563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
120, 113
               

               
Conread position:
               
84-576
               

               
Cow position:
               
chr18:44398435-44397943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 108
               

               
Conread position:
               
84-576
               

               
Cow position:
               
chr18:49021571-49022063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
84-576
               

               
Cow position:
               
chr18:52427720-52428213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
85-575
               

               
Cow position:
               
chr18:1417923-1418413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
86-543
               

               
Cow position:
               
chr18:51813047-51812589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
87-540
               

               
Cow position:
               
chr18:51812878-51812424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
87-540
               

               
Cow position:
               
chr18:54992742-54993196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
87-571
               

               
Cow position:
               
chr18:51789719-51789234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 298
               

               
Conread position:
               
89-542
               

               
Cow position:
               
chr18:40306178-40306631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
89-542
               

               
Cow position:
               
chr18:53636119-53635666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
90-576
               

               
Cow position:
               
chr18:42675561-42675077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
91-540
               

               
Cow position:
               
chr18:41197502-41197951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
111, 129
               

               
Conread position:
               
91-541
               

               
Cow position:
               
chr18:53610540-53610090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
94-545
               

               
Cow position:
               
chr18:55008825-55009276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
95-540
               

               
Cow position:
               
chr18:51766067-51765622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
96-558
               

               
Cow position:
               
chr18:1418018-1418480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 124
               

               
Conread position:
               
96-574
               

               
Cow position:
               
chr18:50295204-50295682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
97-570
               

               
Cow position:
               
chr18:51765477-51765004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 124
               

               
Conread position:
               
100-570
               

               
Cow position:
               
chr18:44253871-44253401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
103-547
               

               
Cow position:
               
chr18:40075046-40075490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
104-540
               

               
Cow position:
               
chr18:54993012-54993448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
104-541
               

               
Cow position:
               
chr18:42827428-42827865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
104-543
               

               
Cow position:
               
chr18:56494036-56494475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
104-545
               

               
Cow position:
               
chr18:50295380-50295821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
104-546
               

               
Cow position:
               
chr18:54979584-54980026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
101, 116
               

               
Conread position:
               
104-554
               

               
Cow position:
               
chr18:54967059-54967509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
110, 117
               

               
Conread position:
               
104-570
               

               
Cow position:
               
chr18:53635684-53635218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 107
               

               
Conread position:
               
104-576
               

               
Cow position:
               
chr18:53586891-53586419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
104-576
               

               
Cow position:
               
chr18:55067086-55066614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
105-532
               

               
Cow position:
               
chr18:54980089-54980516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
105-534
               

               
Cow position:
               
chr18:53498336-53498762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
105-540
               

               
Cow position:
               
chr18:53559951-53560386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
107-575
               

               
Cow position:
               
chr18:56247786-56247326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
117-570
               

               
Cow position:
               
chr18:43023119-43022665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
121-561
               

               
Cow position:
               
chr18:54993282-54993722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
131-541
               

               
Cow position:
               
chr18:50031015-50030606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
132-576
               

               
Cow position:
               
chr18:42837968-42837524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 88
               

               
Conread position:
               
135-541
               

               
Cow position:
               
chr18:51874195-51874601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
135-574
               

               
Cow position:
               
chr18:53559813-53560252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
137-535
               

               
Cow position:
               
chr18:55523449-55523847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
143-531
               

               
Cow position:
               
chr18:54967935-54968321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
143-537
               

               
Cow position:
               
chr18:50281737-50282131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
146-535
               

               
Cow position:
               
chr18:54993138-54993527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
146-542
               

               
Cow position:
               
chr18:40074921-40075317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
158-542
               

               
Cow position:
               
chr18:53509232-53509616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr18:14453294-14452906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
158-572
               

               
Cow position:
               
chr18:43048734-43048320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
159-542
               

               
Cow position:
               
chr18:33064943-33064560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 127
               

               
Conread position:
               
159-561
               

               
Cow position:
               
chr18:54967783-54968184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
163-576
               

               
Cow position:
               
chr18:42744718-42744305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
136, 119
               

               
Conread position:
               
166-576
               

               
Cow position:
               
chr18:56330185-56329775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
169-512
               

               
Cow position:
               
chr18:49022233-49022576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
169, 153
               

               
Conread position:
               
169-576
               

               
Cow position:
               
chr18:33093101-33092694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
296, 291
               

               
Conread position:
               
186-575
               

               
Cow position:
               
chr18:54992674-54993061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 128
               

               
Conread position:
               
188-541
               

               
Cow position:
               
chr18:42790906-42791257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
253, 6
               

               
Conread position:
               
191-576
               

               
Cow position:
               
chr18:53525887-53526272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
196-545
               

               
Cow position:
               
chr18:50281622-50281971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
203-575
               

               
Cow position:
               
chr18:50059667-50059296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
204-540
               

               
Cow position:
               
chr18:53498010-53498351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
213-541
               

               
Cow position:
               
chr18:50058730-50058408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 7
               

               
Conread position:
               
217-546
               

               
Cow position:
               
chr18:53610498-53610169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
219-543
               

               
Cow position:
               
chr18:43093939-43093627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 76
               

               
Conread position:
               
220-519
               

               
Cow position:
               
chr18:54993548-54993847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
220-576
               

               
Cow position:
               
chr18:1417974-1418330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
203, 195
               

               
Conread position:
               
220-576
               

               
Cow position:
               
chr18:40075331-40075687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
221-543
               

               
Cow position:
               
chr18:53498368-53498687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
221-543
               

               
Cow position:
               
chr18:53526085-53526407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
220, 216
               

               
Conread position:
               
221-545
               

               
Cow position:
               
chr18:53509631-53509955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
221-545
               

               
Cow position:
               
chr18:53586942-53586618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
221-573
               

               
Cow position:
               
chr18:14453963-14453611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
154, 169
               

               
Conread position:
               
221-576
               

               
Cow position:
               
chr18:43175551-43175196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
222-531
               

               
Cow position:
               
chr18:43167766-43168075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
223-576
               

               
Cow position:
               
chr18:42790855-42791208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
226-543
               

               
Cow position:
               
chr18:55523454-55523771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
215, 211
               

               
Conread position:
               
230-540
               

               
Cow position:
               
chr18:54968104-54968414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
230-540
               

               
Cow position:
               
chr18:54980298-54980607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
230-540
               

               
Cow position:
               
chr18:56434279-56434589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
230-542
               

               
Cow position:
               
chr18:50246395-50246707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
230-543
               

               
Cow position:
               
chr18:40074921-40075234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
230-543
               

               
Cow position:
               
chr18:56248175-56247865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
230-574
               

               
Cow position:
               
chr18:50295422-50295766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
231-559
               

               
Cow position:
               
chr18:14454037-14453709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
148, 159
               

               
Conread position:
               
231-576
               

               
Cow position:
               
chr18:42985577-42985232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
239, 229
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr18:43120339-43119995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
233-540
               

               
Cow position:
               
chr18:54967773-54968078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
233-576
               

               
Cow position:
               
chr18:53587185-53586839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
234-535
               

               
Cow position:
               
chr18:22634877-22635179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
237-576
               

               
Cow position:
               
chr18:43048739-43048400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
238-574
               

               
Cow position:
               
chr18:1417824-1418160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
240-541
               

               
Cow position:
               
chr18:14453296-14452995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 150
               

               
Conread position:
               
246-573
               

               
Cow position:
               
chr18:56316047-56316374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
248-555
               

               
Cow position:
               
chr18:56267460-56267151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
144, 130
               

               
Conread position:
               
269-541
               

               
Cow position:
               
chr18:53497993-53498262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
272-545
               

               
Cow position:
               
chr18:40306193-40306466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
272-545
               

               
Cow position:
               
chr18:53636104-53635831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
272-576
               

               
Cow position:
               
chr18:40324860-40324556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
272-576
               

               
Cow position:
               
chr18:43093727-43093426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
293-576
               

               
Cow position:
               
chr18:52433111-52433394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
303-540
               

               
Cow position:
               
chr18:51765187-51764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
305-541
               

               
Cow position:
               
chr18:55523449-55523685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
169, 151
               

               
Conread position:
               
305-546
               

               
Cow position:
               
chr18:40074909-40075153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 204
               

               
Conread position:
               
305-554
               

               
Cow position:
               
chr18:42959663-42959414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
305-576
               

               
Cow position:
               
chr18:44239730-44240001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
254, 259
               

               
Conread position:
               
307-576
               

               
Cow position:
               
chr18:42959746-42959476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
312-534
               

               
Cow position:
               
chr18:51838722-51838501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
312-572
               

               
Cow position:
               
chr18:55523372-55523632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr18:50059727-50059464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
313-545
               

               
Cow position:
               
chr18:43167773-43168005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 124
               

               
Conread position:
               
314-540
               

               
Cow position:
               
chr18:42791702-42791928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
167, 157
               

               
Conread position:
               
314-545
               

               
Cow position:
               
chr18:50022337-50022106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
314-574
               

               
Cow position:
               
chr18:53587017-53586757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
71, 76
               

               
Conread position:
               
314-576
               

               
Cow position:
               
chr18:41197557-41197819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
314-576
               

               
Cow position:
               
chr18:51752185-51751923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
314-576
               

               
Cow position:
               
chr18:51969407-51969667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
315-576
               

               
Cow position:
               
chr18:14454037-14453776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
316-576
               

               
Cow position:
               
chr18:42960315-42960055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
318-545
               

               
Cow position:
               
chr18:42827390-42827617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
319-576
               

               
Cow position:
               
chr18:50848322-50848579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
320-576
               

               
Cow position:
               
chr18:53509225-53509482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
320-576
               

               
Cow position:
               
chr18:53525679-53525936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
324-546
               

               
Cow position:
               
chr18:55067120-55066896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
327-542
               

               
Cow position:
               
chr18:50245988-50246203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 61
               

               
Conread position:
               
330-573
               

               
Cow position:
               
chr18:56330189-56329946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
334-540
               

               
Cow position:
               
chr18:56128123-56128329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-576
               

               
Cow position:
               
chr18:56316051-56316293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
335-575
               

               
Cow position:
               
chr18:14453285-14453045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
336-558
               

               
Cow position:
               
chr18:42724584-42724362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
336-576
               

               
Cow position:
               
chr18:49033378-49033138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
231, 225
               

               
Conread position:
               
347-534
               

               
Cow position:
               
chr18:43175593-43175406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
348-575
               

               
Cow position:
               
chr18:56248222-56248000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
356-573
               

               
Cow position:
               
chr18:42693856-42693639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-576
               

               
Cow position:
               
chr18:43053435-43053215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-546
               

               
Cow position:
               
chr18:42724606-42724458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-576
               

               
Cow position:
               
chr18:55067118-55066950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 71
               
Show alignments to all cow chromosomes.