Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-499 |
| Cow position: | chr19:43570135-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 204, 222 |
| Conread position: | 1-503 |
| Cow position: | chr19:23649979-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-512 |
| Cow position: | chr19:23597202-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 181, 204 |
| Conread position: | 1-533 |
| Cow position: | chr19:23613857-23614389 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 121, 154 |
| Conread position: | 1-535 |
| Cow position: | chr19:23614361-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 121, 132 |
| Conread position: | 1-540 |
| Cow position: | chr19:14940329-14940868 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 146 |
| Conread position: | 1-540 |
| Cow position: | chr19:20678124-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 1-541 |
| Cow position: | chr19:23649391-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-543 |
| Cow position: | chr19:14960302-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 1-544 |
| Cow position: | chr19:20635628-20635085 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 1-545 |
| Cow position: | chr19:20677956-20678500 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 1-570 |
| Cow position: | chr19:23649895-23650464 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 281 |
| Conread position: | 1-574 |
| Cow position: | chr19:14960386-14959815 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 123 |
| Conread position: | 1-576 |
| Cow position: | chr19:14940161-14940736 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 213 |
| Conread position: | 1-576 |
| Cow position: | chr19:14959480-14958920 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 347 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 144, 121 |
| Conread position: | 1-576 |
| Cow position: | chr19:23596953-23597525 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 1-576 |
| Cow position: | chr19:23613689-23614264 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 1-576 |
| Cow position: | chr19:23649307-23649882 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 86 |
| Conread position: | 1-576 |
| Cow position: | chr19:23649559-23650134 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 204 |
| Conread position: | 1-576 |
| Cow position: | chr19:23649643-23650218 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 181 |
| Conread position: | 2-496 |
| Cow position: | chr19:14940582-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 120, 145 |
| Conread position: | 2-542 |
| Cow position: | chr19:23613354-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 200, 221 |
| Conread position: | 2-542 |
| Cow position: | chr19:23614026-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 203, 220 |
| Conread position: | 2-543 |
| Cow position: | chr19:20678041-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 203, 217 |
| Conread position: | 2-543 |
| Cow position: | chr19:23613774-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 127, 114 |
| Conread position: | 2-573 |
| Cow position: | chr19:14940498-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 205, 221 |
| Conread position: | 2-575 |
| Cow position: | chr19:20677705-20678278 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 2-575 |
| Cow position: | chr19:23614530-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 2-576 |
| Cow position: | chr19:23649812-23650386 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 3-543 |
| Cow position: | chr19:20677371-20677910 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 5 |
| Conread position: | 5-576 |
| Cow position: | chr19:14940249-14940820 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-576 |
| Cow position: | chr19:23597122-23597693 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-576 |
| Cow position: | chr19:14940421-14940988 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 222, 218 |
| Conread position: | 10-575 |
| Cow position: | chr19:23597043-23597608 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 213 |
| Conread position: | 12-541 |
| Cow position: | chr19:43570366-43569847 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 333 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 116, 90 |
| Conread position: | 20-576 |
| Cow position: | chr19:14940012-14940568 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 127 |
| Conread position: | 61-543 |
| Cow position: | chr19:23614505-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 75, 55 |
| Conread position: | 62-550 |
| Cow position: | chr19:14948484-14947997 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 71-537 |
| Cow position: | chr19:14959578-14959121 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 134, 150 |
| Conread position: | 72-543 |
| Cow position: | chr19:23613340-23613811 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 83-545 |
| Cow position: | chr19:14940159-14940621 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 302 |
| Conread position: | 83-574 |
| Cow position: | chr19:23649305-23649797 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 87-575 |
| Cow position: | chr19:14959646-14959167 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 96, 112 |
| Conread position: | 95-547 |
| Cow position: | chr19:14959311-14958865 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 104-541 |
| Cow position: | chr19:20677639-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 196, 178 |
| Conread position: | 132-509 |
| Cow position: | chr19:14959190-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 65 |
| Conread position: | 219-574 |
| Cow position: | chr19:14948411-14948057 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 221-522 |
| Cow position: | chr19:14959596-14959295 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 94 |
| Conread position: | 221-574 |
| Cow position: | chr19:14959678-14959327 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 230-576 |
| Cow position: | chr19:14960409-14960065 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 237-542 |
| Cow position: | chr19:20677688-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 240-576 |
| Cow position: | chr19:20677439-20677775 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 159 |
| Conread position: | 248-573 |
| Cow position: | chr19:23649302-23649627 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 293-542 |
| Cow position: | chr19:43570337-43570098 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 301-570 |
| Cow position: | chr19:23596918-23597183 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 311-576 |
| Cow position: | chr19:23613411-23613676 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-576 |
| Cow position: | chr19:14948484-14948223 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 319-542 |
| Cow position: | chr19:20635646-20635423 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-576 |
| Cow position: | chr19:14939990-14940232 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.