Cow genome map


           Conread name:
           Ss1.1-rpldo0109_h4.5
        

               Conread position:
               1-499
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               300
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               204, 222
               

               Conread position:
               1-503
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               320
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               181, 204
               

               Conread position:
               1-533
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               321
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               121, 154
               

               Conread position:
               1-535
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               325
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               121, 132
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               329
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               140, 146
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               336
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               55, 86
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 84
               

               Conread position:
               1-544
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               336
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               64, 87
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               319
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 281
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 123
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 213
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               347
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               144, 121
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 83
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 132
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 86
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 204
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 181
               

               Conread position:
               2-496
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               303
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               120, 145
               

               Conread position:
               2-542
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               327
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               200, 221
               

               Conread position:
               2-542
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               203, 220
               

               Conread position:
               2-543
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               203, 217
               

               Conread position:
               2-543
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               336
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               127, 114
               

               Conread position:
               2-573
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               340
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               205, 221
               

               Conread position:
               2-575
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               334
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               120, 131
               

               Conread position:
               2-575
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               356
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               2-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 85
               

               Conread position:
               3-543
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               72, 5
               

               Conread position:
               5-576
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-576
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-576
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               338
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               222, 218
               

               Conread position:
               10-575
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 213
               

               Conread position:
               12-541
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               333
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               116, 90
               

               Conread position:
               20-576
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 127
               

               Conread position:
               61-543
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               315
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               75, 55
               

               Conread position:
               62-550
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               309
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               60, 71
               

               Conread position:
               71-537
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               280
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               134, 150
               

               Conread position:
               72-543
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               299
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               117, 133
               

               Conread position:
               83-545
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 302
               

               Conread position:
               83-574
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 39
               

               Conread position:
               87-575
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               299
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               96, 112
               

               Conread position:
               95-547
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               104-541
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               266
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               196, 178
               

               Conread position:
               132-509
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               163, 65
               

               Conread position:
               219-574
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               221-522
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               88, 94
               

               Conread position:
               221-574
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               55, 27
               

               Conread position:
               230-576
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               256, 0
               

               Conread position:
               237-542
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               63, 45
               

               Conread position:
               240-576
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               139, 159
               

               Conread position:
               248-573
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               293-542
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               301-570
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               140, 13
               

               Conread position:
               311-576
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-576
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               64, 71
               

               Conread position:
               319-542
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               334-576
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.