Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-346 |
| Cow position: | chr22:11641113-11641458 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 1-421 |
| Cow position: | chr22:12385327-12384907 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-426 |
| Cow position: | chr22:11641029-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 1-458 |
| Cow position: | chr22:12418940-12418483 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 214, 196 |
| Conread position: | 1-507 |
| Cow position: | chr22:12458269-12457763 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 1-540 |
| Cow position: | chr22:12458521-12457982 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 146 |
| Conread position: | 1-542 |
| Cow position: | chr22:12399673-12399132 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 1-542 |
| Cow position: | chr22:12431737-12431196 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 121, 136 |
| Conread position: | 1-542 |
| Cow position: | chr22:12432241-12431700 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 1-542 |
| Cow position: | chr22:12432325-12431784 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 327 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 476, 482 |
| Conread position: | 1-542 |
| Cow position: | chr22:12476302-12475761 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 1-542 |
| Cow position: | chr22:12498957-12499498 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 1-542 |
| Cow position: | chr22:12499125-12499666 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 112 |
| Conread position: | 1-542 |
| Cow position: | chr22:12499209-12499750 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 1-542 |
| Cow position: | chr22:46654184-46654725 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 1-543 |
| Cow position: | chr22:11640693-11641235 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 329 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 470, 479 |
| Conread position: | 1-543 |
| Cow position: | chr22:11640861-11641403 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 220 |
| Conread position: | 1-543 |
| Cow position: | chr22:12431905-12431363 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 1-543 |
| Cow position: | chr22:12458437-12457895 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 183, 198 |
| Conread position: | 1-543 |
| Cow position: | chr22:12476050-12475508 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 143 |
| Conread position: | 1-545 |
| Cow position: | chr22:14429817-14430361 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 148, 110 |
| Conread position: | 1-554 |
| Cow position: | chr22:14430153-14430706 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 1-570 |
| Cow position: | chr22:12399337-12398768 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 195 |
| Conread position: | 1-574 |
| Cow position: | chr22:12432409-12431836 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 346 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 204, 220 |
| Conread position: | 1-574 |
| Cow position: | chr22:12475966-12475393 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-574 |
| Cow position: | chr22:12499293-12499866 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 346 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 214, 195 |
| Conread position: | 1-575 |
| Cow position: | chr22:12499377-12499951 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-576 |
| Cow position: | chr22:12399757-12399182 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 196 |
| Conread position: | 1-576 |
| Cow position: | chr22:12431401-12430826 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 1-576 |
| Cow position: | chr22:12475882-12475307 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 385 |
| Conread position: | 2-425 |
| Cow position: | chr22:12499546-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 2-504 |
| Cow position: | chr22:12399252-12398750 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 2-508 |
| Cow position: | chr22:11701189-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 135 |
| Conread position: | 2-512 |
| Cow position: | chr22:12475797-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 475, 468 |
| Conread position: | 2-512 |
| Cow position: | chr22:12499462-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 475, 468 |
| Conread position: | 2-540 |
| Cow position: | chr22:12431316-12430779 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 320 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 2-542 |
| Cow position: | chr22:14429650-14430190 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 2-554 |
| Cow position: | chr22:12399420-12398868 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 5-540 |
| Cow position: | chr22:12432069-12431534 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 295 |
| Conread position: | 5-542 |
| Cow position: | chr22:12432153-12431616 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 106, 132 |
| Conread position: | 6-540 |
| Cow position: | chr22:46654021-46654555 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 118 |
| Conread position: | 7-573 |
| Cow position: | chr22:12498879-12499445 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 176, 201 |
| Conread position: | 8-573 |
| Cow position: | chr22:12476379-12475814 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 175, 200 |
| Conread position: | 8-575 |
| Cow position: | chr22:12419017-12418450 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 197, 212 |
| Conread position: | 14-576 |
| Cow position: | chr22:12399828-12399266 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 198, 183 |
| Conread position: | 20-521 |
| Cow position: | chr22:12431130-12430629 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 274, 262 |
| Conread position: | 28-542 |
| Cow position: | chr22:46654295-46654809 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 51-573 |
| Cow position: | chr22:11640660-11641181 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 53-540 |
| Cow position: | chr22:12399453-12398966 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 59-553 |
| Cow position: | chr22:12385691-12385195 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 62-511 |
| Cow position: | chr22:11666511-11666960 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 62-542 |
| Cow position: | chr22:11701165-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 71-543 |
| Cow position: | chr22:14468048-14468520 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 82-542 |
| Cow position: | chr22:14429814-14430274 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 84-576 |
| Cow position: | chr22:12432494-12432002 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 87-573 |
| Cow position: | chr22:12385409-12384923 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 168 |
| Conread position: | 90-542 |
| Cow position: | chr22:11666455-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 112, 122 |
| Conread position: | 90-545 |
| Cow position: | chr22:11701109-11701564 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 112, 122 |
| Conread position: | 91-575 |
| Cow position: | chr22:12419018-12418534 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 210, 191 |
| Conread position: | 104-537 |
| Cow position: | chr22:12458586-12458153 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 154 |
| Conread position: | 163-543 |
| Cow position: | chr22:14429727-14430107 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 239, 215 |
| Conread position: | 168-535 |
| Cow position: | chr22:12432494-12432127 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 190-576 |
| Cow position: | chr22:12458584-12458198 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 104, 92 |
| Conread position: | 207-469 |
| Cow position: | chr22:12419339-12419077 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 219-540 |
| Cow position: | chr22:11640659-11640980 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 220-531 |
| Cow position: | chr22:12399790-12399479 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 220-552 |
| Cow position: | chr22:46654067-46654399 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 221-543 |
| Cow position: | chr22:14468030-14468352 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 230-575 |
| Cow position: | chr22:12476409-12476064 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 211, 207 |
| Conread position: | 230-575 |
| Cow position: | chr22:12498850-12499195 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 211, 207 |
| Conread position: | 231-550 |
| Cow position: | chr22:12458627-12458308 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 247-544 |
| Cow position: | chr22:14429727-14430024 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 152, 130 |
| Conread position: | 272-575 |
| Cow position: | chr22:12399900-12399603 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 315-576 |
| Cow position: | chr22:12458627-12458366 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 243, 230 |
| Conread position: | 336-553 |
| Cow position: | chr22:12419294-12419077 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 100 |
| Conread position: | 338-543 |
| Cow position: | chr22:12399918-12399719 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 338-576 |
| Cow position: | chr22:12419023-12418785 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.