Cow genome map


           Conread name:
           Ss1.1-rpldo0109_h4.5
        

               Conread position:
               1-346
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               49, 62
               

               Conread position:
               1-421
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-426
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               39, 54
               

               Conread position:
               1-458
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               214, 196
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               120, 130
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 146
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 54
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               333
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               121, 136
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               327
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               476, 482
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 45
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               333
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               52, 45
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               336
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               118, 112
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               34, 26
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               316
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               71, 64
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               329
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               470, 479
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 220
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               100, 79
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               327
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               183, 198
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 143
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               334
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               148, 110
               

               Conread position:
               1-554
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               145, 121
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 195
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               346
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               204, 220
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               339
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               346
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               214, 195
               

               Conread position:
               1-575
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 196
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               335
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               125, 112
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               389, 385
               

               Conread position:
               2-425
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               73, 67
               

               Conread position:
               2-504
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 114
               

               Conread position:
               2-508
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               114, 135
               

               Conread position:
               2-512
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               314
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               475, 468
               

               Conread position:
               2-512
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               475, 468
               

               Conread position:
               2-540
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               320
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               2-542
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               2-554
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 47
               

               Conread position:
               5-540
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 295
               

               Conread position:
               5-542
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               330
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               106, 132
               

               Conread position:
               6-540
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               321
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               105, 118
               

               Conread position:
               7-573
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               339
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               176, 201
               

               Conread position:
               8-573
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               335
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               175, 200
               

               Conread position:
               8-575
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               346
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               197, 212
               

               Conread position:
               14-576
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               344
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               198, 183
               

               Conread position:
               20-521
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               297
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               274, 262
               

               Conread position:
               28-542
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               126, 121
               

               Conread position:
               51-573
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               71, 11
               

               Conread position:
               53-540
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 79
               

               Conread position:
               59-553
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               38, 32
               

               Conread position:
               62-511
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               80, 70
               

               Conread position:
               62-542
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               302
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               80, 71
               

               Conread position:
               71-543
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               285
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               51, 62
               

               Conread position:
               82-542
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 65
               

               Conread position:
               84-576
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               49, 32
               

               Conread position:
               87-573
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 168
               

               Conread position:
               90-542
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               293
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               112, 122
               

               Conread position:
               90-545
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               287
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               112, 122
               

               Conread position:
               91-575
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               299
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               210, 191
               

               Conread position:
               104-537
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 154
               

               Conread position:
               163-543
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               239, 215
               

               Conread position:
               168-535
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               126, 114
               

               Conread position:
               190-576
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               104, 92
               

               Conread position:
               207-469
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               17, 10
               

               Conread position:
               219-540
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               220-531
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               220-552
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               11, 7
               

               Conread position:
               221-543
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               94, 61
               

               Conread position:
               230-575
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               211, 207
               

               Conread position:
               230-575
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               211, 207
               

               Conread position:
               231-550
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               247-544
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               152, 130
               

               Conread position:
               272-575
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               315-576
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               243, 230
               

               Conread position:
               336-553
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               86, 100
               

               Conread position:
               338-543
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               53, 38
               

               Conread position:
               338-576
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.