Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-424 |
| Cow position: | chr23:24547075-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 219, 196 |
| Conread position: | 1-472 |
| Cow position: | chr23:25626618-25627090 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 125, 121 |
| Conread position: | 1-475 |
| Cow position: | chr23:24522646-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 221, 38 |
| Conread position: | 1-496 |
| Cow position: | chr23:24547159-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-503 |
| Cow position: | chr23:25660238-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 136, 115 |
| Conread position: | 1-507 |
| Cow position: | chr23:24560635-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 115 |
| Conread position: | 1-520 |
| Cow position: | chr23:24639555-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 1-542 |
| Cow position: | chr23:24560803-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 1-575 |
| Cow position: | chr23:24547243-24546671 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 115 |
| Conread position: | 2-520 |
| Cow position: | chr23:25626454-25626969 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 140 |
| Conread position: | 2-573 |
| Cow position: | chr23:24522811-24522245 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 355 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 2-576 |
| Cow position: | chr23:24639388-24639962 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 8-463 |
| Cow position: | chr23:24535867-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 207, 215 |
| Conread position: | 8-507 |
| Cow position: | chr23:25626544-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 315 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 199, 43 |
| Conread position: | 8-576 |
| Cow position: | chr23:24639310-24639878 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 9-574 |
| Cow position: | chr23:25698645-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 351 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 12-576 |
| Cow position: | chr23:24536031-24535467 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 251, 243 |
| Conread position: | 14-576 |
| Cow position: | chr23:24560706-24560144 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 20-543 |
| Cow position: | chr23:25660173-25660696 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 213 |
| Conread position: | 20-570 |
| Cow position: | chr23:24639490-24640040 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 59-543 |
| Cow position: | chr23:24522672-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 61-576 |
| Cow position: | chr23:24547267-24546752 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 159 |
| Conread position: | 72-575 |
| Cow position: | chr23:25660143-25660644 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 73-543 |
| Cow position: | chr23:24560815-24560345 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 221, 209 |
| Conread position: | 91-542 |
| Cow position: | chr23:24535868-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 295, 284 |
| Conread position: | 100-520 |
| Cow position: | chr23:24626326-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 104-496 |
| Cow position: | chr23:25724105-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 131-576 |
| Cow position: | chr23:24522768-24522326 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 141-540 |
| Cow position: | chr23:25626089-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 143-574 |
| Cow position: | chr23:25626007-25626438 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 146-576 |
| Cow position: | chr23:25626514-25626941 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 156-576 |
| Cow position: | chr23:24560898-24560480 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 139, 44 |
| Conread position: | 162-576 |
| Cow position: | chr23:24626304-24626718 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 188-576 |
| Cow position: | chr23:24547306-24546920 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 190-576 |
| Cow position: | chr23:25660175-25660561 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-576 |
| Cow position: | chr23:25724088-25723717 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 219-522 |
| Cow position: | chr23:24654086-24654389 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 220-540 |
| Cow position: | chr23:24639270-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 111, 119 |
| Conread position: | 250-576 |
| Cow position: | chr23:24654032-24654359 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 269-576 |
| Cow position: | chr23:25724108-25723801 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 123, 108 |
| Conread position: | 270-576 |
| Cow position: | chr23:25660171-25660477 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 219, 215 |
| Conread position: | 272-576 |
| Cow position: | chr23:24547308-24547004 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 105 |
| Conread position: | 293-576 |
| Cow position: | chr23:25698697-25698414 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 314-576 |
| Cow position: | chr23:25626094-25626356 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-576 |
| Cow position: | chr23:24547330-24547088 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 41 |
Show alignments to all cow chromosomes.