Cow genome map


           Conread name:
           Ss1.1-rpldo0109_h4.5
        

               Conread position:
               1-339
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               122, 132
               

               Conread position:
               1-344
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               201, 218
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 121
               

               Conread position:
               1-495
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 278
               

               Conread position:
               1-497
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               298
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               192, 103
               

               Conread position:
               1-497
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               217, 196
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 281
               

               Conread position:
               1-534
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               331
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               177, 191
               

               Conread position:
               1-534
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               334
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               188, 198
               

               Conread position:
               1-534
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               342
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               213, 222
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               329
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               200, 207
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               323
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               125, 121
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               335
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 181
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 121
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               332
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               174, 79
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 219
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               321
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               271, 257
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 83
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               324
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               167, 162
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               341
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               78, 83
               

               Conread position:
               1-558
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               347
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               125, 115
               

               Conread position:
               1-558
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 281
               

               Conread position:
               1-569
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               198, 176
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               343
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               293, 277
               

               Conread position:
               1-573
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 132
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 133
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               347
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               132, 121
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 281
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 132
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 145
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 115
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               353
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               94, 86
               

               Conread position:
               2-477
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 174
               

               Conread position:
               2-509
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               295, 284
               

               Conread position:
               2-519
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               317
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               124, 109
               

               Conread position:
               2-575
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               346
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               190, 173
               

               Conread position:
               2-575
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 280
               

               Conread position:
               5-541
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 132
               

               Conread position:
               5-575
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               346
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               195, 204
               

               Conread position:
               9-540
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               289, 270
               

               Conread position:
               10-423
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               12-576
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               13-576
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 198
               

               Conread position:
               14-541
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               327
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               290, 168
               

               Conread position:
               20-545
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 179
               

               Conread position:
               20-570
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               324
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               59-543
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               309
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               46, 21
               

               Conread position:
               62-576
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 135
               

               Conread position:
               71-544
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               24, 16
               

               Conread position:
               73-505
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 60
               

               Conread position:
               73-507
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               207, 14
               

               Conread position:
               74-575
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               300
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               121, 134
               

               Conread position:
               84-518
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               278
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               44, 49
               

               Conread position:
               87-573
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               307
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               43, 60
               

               Conread position:
               91-575
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               301
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 85
               

               Conread position:
               97-576
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 25
               

               Conread position:
               104-545
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               271
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               105, 93
               

               Conread position:
               104-554
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 96
               

               Conread position:
               130-573
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 249
               

               Conread position:
               156-520
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               233
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               7, 42
               

               Conread position:
               162-576
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               167-575
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               47, 53
               

               Conread position:
               219-570
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               134, 142
               

               Conread position:
               219-576
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               54, 39
               

               Conread position:
               220-576
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               244, 0
               

               Conread position:
               221-520
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               80, 29
               

               Conread position:
               221-543
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               76, 83
               

               Conread position:
               222-542
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               222-576
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               315, 111
               

               Conread position:
               230-507
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               219, 225
               

               Conread position:
               248-575
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               46, 38
               

               Conread position:
               252-543
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               42, 28
               

               Conread position:
               269-542
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 12
               

               Conread position:
               270-540
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               271-570
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               274-455
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               277-576
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               299-575
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 31
               

               Conread position:
               302-553
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               139, 58
               

               Conread position:
               310-570
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               7, 14
               

               Conread position:
               312-576
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               48, 60
               

               Conread position:
               313-570
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-542
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-576
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               317-576
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               334-542
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               54, 44
               

               Conread position:
               334-543
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               335-570
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               214, 223
               

               Conread position:
               336-545
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               338-575
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               13, 40
               

               Conread position:
               354-541
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               440-576
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.