Cow genome map

Conread name: Ss1.1-rpldo0109_h4.5

Conread position: 1-339
Cow position: chr25:36801629-36801967 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 212
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 132

Conread position: 1-344
Cow position: chr25:33127888-33128231 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 220
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 201, 218

Conread position: 1-492
Cow position: chr25:33157219-33156729 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 121

Conread position: 1-495
Cow position: chr25:23420385-23420879 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 278

Conread position: 1-497
Cow position: chr25:33144935-33145428 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 298
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 192, 103

Conread position: 1-497
Cow position: chr25:36801461-36801957 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 304
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 217, 196

Conread position: 1-520
Cow position: chr25:33157303-33156785 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 281

Conread position: 1-534
Cow position: chr25:33298733-33299266 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 331
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 177, 191

Conread position: 1-534
Cow position: chr25:33299321-33299850 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 334
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 188, 198

Conread position: 1-534
Cow position: chr25:36800801-36801334 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 342
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 213, 222

Conread position: 1-541
Cow position: chr25:326583-327129 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 329
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 200, 207

Conread position: 1-541
Cow position: chr25:25652778-25653318 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 323
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 125, 121

Conread position: 1-541
Cow position: chr25:33298565-33299105 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 335
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 127, 136

Conread position: 1-541
Cow position: chr25:33299069-33299609 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 181

Conread position: 1-541
Cow position: chr25:33299153-33299693 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 121

Conread position: 1-541
Cow position: chr25:33305400-33304866 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 332
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 174, 79

Conread position: 1-542
Cow position: chr25:34447108-34447649 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 219

Conread position: 1-543
Cow position: chr25:25652442-25652984 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 321
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 271, 257

Conread position: 1-543
Cow position: chr25:34447024-34447566 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 83

Conread position: 1-545
Cow position: chr25:3663933-3664477 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 317
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 46

Conread position: 1-545
Cow position: chr25:25652694-25653238 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 324
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 167, 162

Conread position: 1-545
Cow position: chr25:36800717-36801261 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 341
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 78, 83

Conread position: 1-558
Cow position: chr25:34447276-34447825 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 347
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 125, 115

Conread position: 1-558
Cow position: chr25:34769954-34769397 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 281

Conread position: 1-569
Cow position: chr25:25652610-25653178 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 334
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 198, 176

Conread position: 1-570
Cow position: chr25:25652358-25652927 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 343
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 293, 277

Conread position: 1-573
Cow position: chr25:33298985-33299557 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 132

Conread position: 1-574
Cow position: chr25:33298649-33299222 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 133

Conread position: 1-574
Cow position: chr25:36801053-36801614 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 347
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 132, 121

Conread position: 1-576
Cow position: chr25:33157387-33156812 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 281

Conread position: 1-576
Cow position: chr25:33298817-33299392 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 132

Conread position: 1-576
Cow position: chr25:33299237-33299812 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 145

Conread position: 1-576
Cow position: chr25:34770038-34769463 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 115

Conread position: 1-576
Cow position: chr25:36801377-36801952 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 353
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 94, 86

Conread position: 2-477
Cow position: chr25:34769701-34769227 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 174

Conread position: 2-509
Cow position: chr25:22235832-22236339 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 294
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 295, 284

Conread position: 2-519
Cow position: chr25:34714037-34714551 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 317
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 109

Conread position: 2-575
Cow position: chr25:326668-327247 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 346
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 190, 173

Conread position: 2-575
Cow position: chr25:34769869-34769296 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 280

Conread position: 5-541
Cow position: chr25:33298905-33299441 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 132

Conread position: 5-575
Cow position: chr25:34762835-34763402 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 346
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 195, 204

Conread position: 9-540
Cow position: chr25:34732598-34732067 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 306
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 289, 270

Conread position: 10-423
Cow position: chr25:326853-327263 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 259
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 14

Conread position: 12-576
Cow position: chr25:33157544-33156980 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 24

Conread position: 13-576
Cow position: chr25:34763176-34763736 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 198

Conread position: 14-541
Cow position: chr25:33144864-33145388 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 327
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 290, 168

Conread position: 20-545
Cow position: chr25:23420320-23420845 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 179

Conread position: 20-570
Cow position: chr25:25652293-25652843 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 324
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 59-543
Cow position: chr25:34770148-34769664 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 309
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 21

Conread position: 62-576
Cow position: chr25:34447001-34447515 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 135

Conread position: 71-544
Cow position: chr25:22235817-22236290 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 286
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 16

Conread position: 73-505
Cow position: chr25:33127792-33128224 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 73-507
Cow position: chr25:34732616-34732184 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 264
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 207, 14

Conread position: 74-575
Cow position: chr25:326488-326995 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 300
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 121, 134

Conread position: 84-518
Cow position: chr25:33305401-33304971 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 278
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 49

Conread position: 87-573
Cow position: chr25:33298567-33299053 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 307
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 43, 60

Conread position: 91-575
Cow position: chr25:36800639-36801123 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 301
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 95, 85

Conread position: 97-576
Cow position: chr25:33127732-33128211 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 25

Conread position: 104-545
Cow position: chr25:33144870-33145308 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 271
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 105, 93

Conread position: 104-554
Cow position: chr25:23420320-23420770 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 96

Conread position: 130-573
Cow position: chr25:34446985-34447428 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 249

Conread position: 156-520
Cow position: chr25:34732620-34732255 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 233
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 7, 42

Conread position: 162-576
Cow position: chr25:36844625-36844220 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 257
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 59

Conread position: 167-575
Cow position: chr25:33298479-33298887 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 266
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 53

Conread position: 219-570
Cow position: chr25:346500-346851 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 213
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 134, 142

Conread position: 219-576
Cow position: chr25:34770156-34769799 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 54, 39

Conread position: 220-576
Cow position: chr25:34433658-34434011 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 217
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 244, 0

Conread position: 221-520
Cow position: chr25:34433578-34433874 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 29

Conread position: 221-543
Cow position: chr25:18642201-18641876 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 200
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 83

Conread position: 222-542
Cow position: chr25:34770069-34769749 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 222-576
Cow position: chr25:34433495-34433846 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 218
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 315, 111

Conread position: 230-507
Cow position: chr25:326986-327263 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 174
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 219, 225

Conread position: 248-575
Cow position: chr25:326494-326821 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 46, 38

Conread position: 252-543
Cow position: chr25:366726-367017 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 28

Conread position: 269-542
Cow position: chr25:346466-346739 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 12

Conread position: 270-540
Cow position: chr25:34732589-34732319 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 271-570
Cow position: chr25:25652292-25652591 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 274-455
Cow position: chr25:34433043-34433224 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 277-576
Cow position: chr25:33127659-33127959 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 195
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 30

Conread position: 299-575
Cow position: chr25:34762793-34763069 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 175
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 31

Conread position: 302-553
Cow position: chr25:414807-414561 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 139, 58

Conread position: 310-570
Cow position: chr25:34446913-34447173 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 7, 14

Conread position: 312-576
Cow position: chr25:33157580-33157316 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 170
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 60

Conread position: 313-570
Cow position: chr25:25652250-25652507 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 314-542
Cow position: chr25:22235976-22236204 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 314-576
Cow position: chr25:366704-366966 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 317-576
Cow position: chr25:36844638-36844379 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 334-542
Cow position: chr25:414697-414489 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 44

Conread position: 334-543
Cow position: chr25:34732609-34732400 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 335-570
Cow position: chr25:25652188-25652423 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 155
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 214, 223

Conread position: 336-545
Cow position: chr25:427330-427539 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 40

Conread position: 338-575
Cow position: chr25:22235831-22236069 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 13, 40

Conread position: 354-541
Cow position: chr25:23420318-23420505 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 440-576
Cow position: chr25:23420320-23420456 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.