Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-340 |
| Cow position: | chr28:9253273-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 223, 196 |
| Conread position: | 1-343 |
| Cow position: | chr28:33210314-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 197, 210 |
| Conread position: | 1-497 |
| Cow position: | chr28:7757838-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 127, 146 |
| Conread position: | 1-507 |
| Cow position: | chr28:9253105-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 1-520 |
| Cow position: | chr28:7810434-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 90 |
| Conread position: | 1-522 |
| Cow position: | chr28:34696082-34696601 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 294, 281 |
| Conread position: | 1-540 |
| Cow position: | chr28:7758174-7758697 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 1-541 |
| Cow position: | chr28:7757670-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 115 |
| Conread position: | 1-543 |
| Cow position: | chr28:7758006-7758532 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 115 |
| Conread position: | 1-545 |
| Cow position: | chr28:9290174-9290712 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 1-545 |
| Cow position: | chr28:34695998-34696542 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 328 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 130, 146 |
| Conread position: | 1-570 |
| Cow position: | chr28:11334051-11333482 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 204, 212 |
| Conread position: | 1-574 |
| Cow position: | chr28:11334135-11333562 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 297, 281 |
| Conread position: | 1-576 |
| Cow position: | chr28:7757418-7757993 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 204 |
| Conread position: | 2-377 |
| Cow position: | chr28:7758495-7758870 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 85 |
| Conread position: | 2-426 |
| Cow position: | chr28:33210231-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 292, 277 |
| Conread position: | 2-574 |
| Cow position: | chr28:34695915-34696487 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 2-576 |
| Cow position: | chr28:7757755-7758329 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 131 |
| Conread position: | 8-541 |
| Cow position: | chr28:7757263-7757790 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 120, 60 |
| Conread position: | 10-576 |
| Cow position: | chr28:9253030-9253596 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 195 |
| Conread position: | 29-574 |
| Cow position: | chr28:9298598-9299138 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 191, 69 |
| Conread position: | 51-536 |
| Cow position: | chr28:9298702-9299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 151, 112 |
| Conread position: | 52-540 |
| Cow position: | chr28:7757553-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 53-541 |
| Cow position: | chr28:9252989-9253477 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 53-575 |
| Cow position: | chr28:7810402-7810915 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 59-576 |
| Cow position: | chr28:9299043-9299546 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 62-498 |
| Cow position: | chr28:11333906-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 190, 197 |
| Conread position: | 82-511 |
| Cow position: | chr28:33210227-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 94-519 |
| Cow position: | chr28:7758335-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 108, 129 |
| Conread position: | 104-541 |
| Cow position: | chr28:34673376-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 126-545 |
| Cow position: | chr28:9252894-9253313 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 167-506 |
| Cow position: | chr28:9299221-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 221-559 |
| Cow position: | chr28:33210282-33210621 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 226-553 |
| Cow position: | chr28:34695719-34696046 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 230-541 |
| Cow position: | chr28:7810327-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 246-576 |
| Cow position: | chr28:7757165-7757489 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 249-543 |
| Cow position: | chr28:34673353-34673647 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 259-575 |
| Cow position: | chr28:7757340-7757656 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 163, 175 |
| Conread position: | 272-520 |
| Cow position: | chr28:7810285-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-575 |
| Cow position: | chr28:33210249-33210552 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 314-534 |
| Cow position: | chr28:34695891-34696111 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 62 |
| Conread position: | 314-576 |
| Cow position: | chr28:9298713-9298974 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 335-576 |
| Cow position: | chr28:33210228-33210469 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 198, 223 |
| Conread position: | 355-575 |
| Cow position: | chr28:7810284-7810504 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.