Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-504 |
| Cow position: | chr3:68045855-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 185, 194 |
| Conread position: | 1-568 |
| Cow position: | chr3:68027178-68027745 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 1-570 |
| Cow position: | chr3:62722155-62721586 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 348 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 215, 222 |
| Conread position: | 1-570 |
| Cow position: | chr3:68045771-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 115 |
| Conread position: | 2-498 |
| Cow position: | chr3:62722070-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 181, 194 |
| Conread position: | 2-553 |
| Cow position: | chr3:62742448-62742996 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 346 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 121 |
| Conread position: | 2-575 |
| Cow position: | chr3:62722238-62721665 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 280 |
| Conread position: | 14-543 |
| Cow position: | chr3:68045700-68046229 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 108 |
| Conread position: | 14-544 |
| Cow position: | chr3:20194737-20195267 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 217, 211 |
| Conread position: | 22-543 |
| Cow position: | chr3:62742221-62742735 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 29-543 |
| Cow position: | chr3:68045631-68046145 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 175, 190 |
| Conread position: | 29-576 |
| Cow position: | chr3:68027122-68027669 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 74-545 |
| Cow position: | chr3:68027083-68027554 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 131, 145 |
| Conread position: | 74-576 |
| Cow position: | chr3:68045594-68046094 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 314 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 220, 13 |
| Conread position: | 75-545 |
| Cow position: | chr3:68027002-68027470 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 84-575 |
| Cow position: | chr3:62722325-62721833 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 92-576 |
| Cow position: | chr3:62722232-62721748 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 104 |
| Conread position: | 105-576 |
| Cow position: | chr3:62722387-62721916 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 209-575 |
| Cow position: | chr3:62742488-62742849 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 181, 153 |
| Conread position: | 224-543 |
| Cow position: | chr3:68026981-68027300 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 279-544 |
| Cow position: | chr3:20194833-20195099 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 328-576 |
| Cow position: | chr3:62742270-62742519 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 329-545 |
| Cow position: | chr3:68027002-68027218 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.