Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-478 |
| Cow position: | chr6:49340994-49341469 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 295, 290 |
| Conread position: | 1-507 |
| Cow position: | chr6:49428986-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 181, 204 |
| Conread position: | 1-543 |
| Cow position: | chr6:49396295-49396837 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 147, 139 |
| Conread position: | 1-544 |
| Cow position: | chr6:49428230-49428773 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 225, 246 |
| Conread position: | 1-545 |
| Cow position: | chr6:49428314-49428858 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 157, 141 |
| Conread position: | 1-548 |
| Cow position: | chr6:49428566-49429113 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 330 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 130, 135 |
| Conread position: | 1-573 |
| Cow position: | chr6:49428902-49429474 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 200, 219 |
| Conread position: | 1-574 |
| Cow position: | chr6:49396379-49396952 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 352 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 214, 230 |
| Conread position: | 1-575 |
| Cow position: | chr6:49340406-49340980 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 281 |
| Conread position: | 1-575 |
| Cow position: | chr6:49340658-49341232 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 143 |
| Conread position: | 1-575 |
| Cow position: | chr6:49340742-49341316 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 143 |
| Conread position: | 5-521 |
| Cow position: | chr6:49396467-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 191, 182 |
| Conread position: | 5-573 |
| Cow position: | chr6:49396053-49396615 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 71-549 |
| Cow position: | chr6:49340980-49341457 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 126 |
| Conread position: | 105-576 |
| Cow position: | chr6:49340345-49340813 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 107-521 |
| Cow position: | chr6:49396233-49396647 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 148-574 |
| Cow position: | chr6:49396112-49396532 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 314-520 |
| Cow position: | chr6:49362642-49362848 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 336-536 |
| Cow position: | chr6:49362424-49362622 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 53 |
Show alignments to all cow chromosomes.