Cow genome map


           Conread name:
           Ss1.1-rpldo0109_h4.5
        

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               121, 132
               

               Conread position:
               1-495
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               309
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               26, 33
               

               Conread position:
               1-534
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               326
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               127, 135
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               335
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               37, 44
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               338
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               128, 115
               

               Conread position:
               1-542
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               324
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               212, 204
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 64
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 230
               

               Conread position:
               1-543
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               321
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               238, 216
               

               Conread position:
               1-545
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               338
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               39, 46
               

               Conread position:
               1-546
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               337
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               239, 210
               

               Conread position:
               1-558
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               1-575
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               354
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               114, 126
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 230
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 110
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               383, 375
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               355
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               110, 117
               

               Conread position:
               1-576
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 222
               

               Conread position:
               2-393
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               292, 277
               

               Conread position:
               2-467
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               292
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               292, 277
               

               Conread position:
               2-540
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               329
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               145, 134
               

               Conread position:
               2-541
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               2-542
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               327
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               93, 87
               

               Conread position:
               2-543
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               144, 133
               

               Conread position:
               2-575
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               346
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               213, 219
               

               Conread position:
               2-576
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 145
               

               Conread position:
               5-541
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 206
               

               Conread position:
               5-543
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               22-534
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               312
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-543
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               93, 110
               

               Conread position:
               28-540
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               290
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               29-576
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 253
               

               Conread position:
               79-543
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               281
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               47, 7
               

               Conread position:
               80-576
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 179
               

               Conread position:
               83-545
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 64
               

               Conread position:
               83-575
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 48
               

               Conread position:
               87-544
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               279
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               87-576
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               297
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               127-576
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               290
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               59, 5
               

               Conread position:
               135-570
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               70, 84
               

               Conread position:
               142-541
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               239, 137
               

               Conread position:
               164-495
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               50, 55
               

               Conread position:
               183-576
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 11
               

               Conread position:
               230-542
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               85, 52
               

               Conread position:
               251-543
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 16
               

               Conread position:
               294-542
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               313-540
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               159, 56
               

               Conread position:
               314-543
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 63
               

               Conread position:
               329-558
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               53, 68
               
Show alignments to all cow chromosomes.