Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-470 |
| Cow position: | chr7:1015025-1015496 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 132 |
| Conread position: | 1-495 |
| Cow position: | chr7:42878770-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 1-534 |
| Cow position: | chr7:42878938-42878405 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 127, 135 |
| Conread position: | 1-540 |
| Cow position: | chr7:1439727-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 1-541 |
| Cow position: | chr7:3180287-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 338 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 128, 115 |
| Conread position: | 1-542 |
| Cow position: | chr7:11601017-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 212, 204 |
| Conread position: | 1-543 |
| Cow position: | chr7:1014443-1014979 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 1-543 |
| Cow position: | chr7:3180203-3180745 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 230 |
| Conread position: | 1-543 |
| Cow position: | chr7:8277262-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 238, 216 |
| Conread position: | 1-545 |
| Cow position: | chr7:1014941-1015487 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 338 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 1-546 |
| Cow position: | chr7:8325491-8326036 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 239, 210 |
| Conread position: | 1-558 |
| Cow position: | chr7:3180119-3180676 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 1-575 |
| Cow position: | chr7:18390164-18390738 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 354 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 126 |
| Conread position: | 1-576 |
| Cow position: | chr7:1014689-1015264 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 230 |
| Conread position: | 1-576 |
| Cow position: | chr7:1014773-1015348 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 110 |
| Conread position: | 1-576 |
| Cow position: | chr7:3179783-3180358 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 375 |
| Conread position: | 1-576 |
| Cow position: | chr7:42878854-42878279 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 1-576 |
| Cow position: | chr7:42879106-42878531 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 222 |
| Conread position: | 2-393 |
| Cow position: | chr7:18390417-18390808 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 292, 277 |
| Conread position: | 2-467 |
| Cow position: | chr7:18390333-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 292, 277 |
| Conread position: | 2-540 |
| Cow position: | chr7:11601100-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 329 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 145, 134 |
| Conread position: | 2-541 |
| Cow position: | chr7:8277767-8278306 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 2-542 |
| Cow position: | chr7:8277431-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 87 |
| Conread position: | 2-543 |
| Cow position: | chr7:8325072-8325613 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 144, 133 |
| Conread position: | 2-575 |
| Cow position: | chr7:42879189-42878616 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 346 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 2-576 |
| Cow position: | chr7:3180036-3180610 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 145 |
| Conread position: | 5-541 |
| Cow position: | chr7:18390252-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 206 |
| Conread position: | 5-543 |
| Cow position: | chr7:8277854-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 22-534 |
| Cow position: | chr7:3179720-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-543 |
| Cow position: | chr7:8242991-8243510 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 110 |
| Conread position: | 28-540 |
| Cow position: | chr7:1438194-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-576 |
| Cow position: | chr7:1014303-1014844 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 253 |
| Conread position: | 79-543 |
| Cow position: | chr7:11601189-11600727 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 80-576 |
| Cow position: | chr7:3179693-3180190 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 179 |
| Conread position: | 83-545 |
| Cow position: | chr7:1014939-1015401 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 83-575 |
| Cow position: | chr7:18390162-18390654 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 87-544 |
| Cow position: | chr7:11601099-11600642 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 87-576 |
| Cow position: | chr7:1014277-1014760 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 127-576 |
| Cow position: | chr7:42879231-42878783 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 59, 5 |
| Conread position: | 135-570 |
| Cow position: | chr7:42879140-42878705 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 142-541 |
| Cow position: | chr7:1439445-1439846 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 239, 137 |
| Conread position: | 164-495 |
| Cow position: | chr7:1014270-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 183-576 |
| Cow position: | chr7:18390012-18390403 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 230-542 |
| Cow position: | chr7:8325804-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 251-543 |
| Cow position: | chr7:8324732-8325025 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 294-542 |
| Cow position: | chr7:11601228-11600980 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-540 |
| Cow position: | chr7:1439532-1439762 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 56 |
| Conread position: | 314-543 |
| Cow position: | chr7:11434508-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 63 |
| Conread position: | 329-558 |
| Cow position: | chr7:1014267-1014496 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 68 |
Show alignments to all cow chromosomes.