Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-496 |
| Cow position: | chr8:55581244-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 209, 220 |
| Conread position: | 1-514 |
| Cow position: | chr8:48407292-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 143 |
| Conread position: | 1-542 |
| Cow position: | chr8:46816215-46816756 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 125, 121 |
| Conread position: | 1-543 |
| Cow position: | chr8:48407040-48406498 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 328 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 146 |
| Conread position: | 1-544 |
| Cow position: | chr8:45201440-45201983 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 330 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 1-545 |
| Cow position: | chr8:45201020-45201564 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 132 |
| Conread position: | 1-559 |
| Cow position: | chr8:46816803-46817361 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 346 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 132 |
| Conread position: | 1-570 |
| Cow position: | chr8:55580992-55581561 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 281 |
| Conread position: | 1-576 |
| Cow position: | chr8:45200936-45201511 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 115 |
| Conread position: | 1-576 |
| Cow position: | chr8:46816047-46816622 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 126, 132 |
| Conread position: | 1-576 |
| Cow position: | chr8:46816467-46817042 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 127, 146 |
| Conread position: | 1-576 |
| Cow position: | chr8:48407544-48406969 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 146 |
| Conread position: | 1-576 |
| Cow position: | chr8:55580908-55581483 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 115 |
| Conread position: | 2-542 |
| Cow position: | chr8:55581161-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 2-576 |
| Cow position: | chr8:46816636-46817210 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 2-576 |
| Cow position: | chr8:48406871-48406297 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 348 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 87, 97 |
| Conread position: | 2-576 |
| Cow position: | chr8:55581077-55581651 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-543 |
| Cow position: | chr8:48407457-48406918 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 216 |
| Conread position: | 5-542 |
| Cow position: | chr8:46816387-46816924 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 337 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 117 |
| Conread position: | 5-543 |
| Cow position: | chr8:45201360-45201898 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 5-545 |
| Cow position: | chr8:45201276-45201816 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 128 |
| Conread position: | 5-576 |
| Cow position: | chr8:48407372-48406801 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 117, 128 |
| Conread position: | 9-576 |
| Cow position: | chr8:48407116-48406549 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 182, 161 |
| Conread position: | 9-576 |
| Cow position: | chr8:48407620-48407053 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 286, 277 |
| Conread position: | 29-545 |
| Cow position: | chr8:55580852-55581368 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 167 |
| Conread position: | 84-547 |
| Cow position: | chr8:46816046-46816509 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 87-507 |
| Cow position: | chr8:48406703-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 8, 114 |
| Conread position: | 87-576 |
| Cow position: | chr8:55580741-55581231 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 181-576 |
| Cow position: | chr8:46815977-46816370 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 313-543 |
| Cow position: | chr8:45200912-45201142 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 334-576 |
| Cow position: | chr8:48407631-48407389 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.