Cow genome map
| Conread name: | Ss1.1-rpldo0109_h4.5 |
| Conread position: | 1-519 |
| Cow position: | chrX:25310060-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 185, 199 |
| Conread position: | 1-530 |
| Cow position: | chrX:13826694-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 321 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 1-543 |
| Cow position: | chrX:25325501-25324959 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 114, 132 |
| Conread position: | 1-547 |
| Cow position: | chrX:25324997-25324451 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 336 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 1-558 |
| Cow position: | chrX:25324913-25324356 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 204 |
| Conread position: | 1-570 |
| Cow position: | chrX:13826862-13826293 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 350 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 1-576 |
| Cow position: | chrX:25309892-25310467 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 1-576 |
| Cow position: | chrX:25325333-25324758 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 182, 195 |
| Conread position: | 2-541 |
| Cow position: | chrX:14181639-14181100 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 322 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 186, 209 |
| Conread position: | 2-547 |
| Cow position: | chrX:25324744-25324203 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 5-543 |
| Cow position: | chrX:25309980-25310518 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 5-576 |
| Cow position: | chrX:25309812-25310383 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 352 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 123, 128 |
| Conread position: | 8-527 |
| Cow position: | chrX:29045167-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 329 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 20-576 |
| Cow position: | chrX:25325230-25324674 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 332 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 60-543 |
| Cow position: | chrX:25309783-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 126, 136 |
| Conread position: | 87-519 |
| Cow position: | chrX:25325836-25325403 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 91-575 |
| Cow position: | chrX:29045168-29044684 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 132-576 |
| Cow position: | chrX:29045294-29044851 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 166-545 |
| Cow position: | chrX:25325588-25325209 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 219-540 |
| Cow position: | chrX:25309774-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 78 |
| Conread position: | 220-547 |
| Cow position: | chrX:13826895-13826568 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 237-540 |
| Cow position: | chrX:25309708-25310011 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 240-545 |
| Cow position: | chrX:29045838-29045533 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 272-540 |
| Cow position: | chrX:29045722-29045455 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 275-547 |
| Cow position: | chrX:14181282-14181010 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 328-575 |
| Cow position: | chrX:25309715-25309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.