Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 18-809 |
| Cow position: | chr13:39983968-39984776 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 560 |
| Conread position: | 197-765 |
| Cow position: | chr13:56333713-56334305 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 368 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 279-848 |
| Cow position: | chr13:56292519-56291955 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 286-760 |
| Cow position: | chr13:56292254-56291787 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 55 |
| Conread position: | 287-844 |
| Cow position: | chr13:56292337-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 139 |
| Conread position: | 288-848 |
| Cow position: | chr13:39984003-39984563 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 191 |
| Conread position: | 288-848 |
| Cow position: | chr13:56333735-56334304 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 188 |
| Conread position: | 289-776 |
| Cow position: | chr13:22124697-22125184 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 289-817 |
| Cow position: | chr13:39930668-39931194 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 291-789 |
| Cow position: | chr13:39984426-39984924 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 292-757 |
| Cow position: | chr13:22124784-22125252 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 308, 296 |
| Conread position: | 292-757 |
| Cow position: | chr13:24162510-24162978 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 207, 203 |
| Conread position: | 292-848 |
| Cow position: | chr13:39984091-39984647 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 113 |
| Conread position: | 292-848 |
| Cow position: | chr13:39984175-39984731 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 292-848 |
| Cow position: | chr13:39984343-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 269 |
| Conread position: | 294-852 |
| Cow position: | chr13:39983841-39984399 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 298-836 |
| Cow position: | chr13:56333661-56334208 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 303-757 |
| Cow position: | chr13:22125467-22125921 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 280 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 203, 199 |
| Conread position: | 304-683 |
| Cow position: | chr13:29183621-29183243 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 304-704 |
| Cow position: | chr13:22125300-22125700 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 313-715 |
| Cow position: | chr13:56292736-56292335 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 316-697 |
| Cow position: | chr13:56333931-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 114, 279 |
| Conread position: | 327-775 |
| Cow position: | chr13:56333606-56334054 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 330-845 |
| Cow position: | chr13:29183760-29183249 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 346-883 |
| Cow position: | chr13:39930641-39931180 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 349-848 |
| Cow position: | chr13:39983812-39984311 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 362-825 |
| Cow position: | chr13:56317356-56317808 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 363-776 |
| Cow position: | chr13:56292850-56292444 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 296, 80 |
| Conread position: | 364-776 |
| Cow position: | chr13:39930575-39930987 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 135, 131 |
| Conread position: | 392-809 |
| Cow position: | chr13:56333503-56333920 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 405-809 |
| Cow position: | chr13:56292891-56292493 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 37 |
| Conread position: | 409-820 |
| Cow position: | chr13:56333604-56334016 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 90, 85 |
| Conread position: | 413-848 |
| Cow position: | chr13:39983708-39984143 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 177, 181 |
| Conread position: | 414-766 |
| Cow position: | chr13:56317929-56318287 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 433-836 |
| Cow position: | chr13:39983812-39984215 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-815 |
| Cow position: | chr13:56333520-56333842 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.