Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 6-799 |
| Cow position: | chr17:22589958-22589154 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 8-812 |
| Cow position: | chr17:22552624-22551802 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 15-722 |
| Cow position: | chr17:22452397-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 15-801 |
| Cow position: | chr17:22552280-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 15-809 |
| Cow position: | chr17:22552532-22551721 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 15-809 |
| Cow position: | chr17:22590034-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 15-812 |
| Cow position: | chr17:22553120-22552306 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 497 |
| Conread position: | 15-848 |
| Cow position: | chr17:22499327-22498486 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 15-848 |
| Cow position: | chr17:22552364-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 16-726 |
| Cow position: | chr17:22473238-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 23-848 |
| Cow position: | chr17:22552692-22551850 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 24-837 |
| Cow position: | chr17:22552775-22551942 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 24-848 |
| Cow position: | chr17:22590109-22589268 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 28-826 |
| Cow position: | chr17:22472853-22473641 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 206 |
| Conread position: | 68-848 |
| Cow position: | chr17:22553149-22552354 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 103-809 |
| Cow position: | chr17:22590424-22589728 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 65 |
| Conread position: | 142-801 |
| Cow position: | chr17:22473279-22473954 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 378 |
| Conread position: | 174-848 |
| Cow position: | chr17:22499333-22498645 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 5 |
| Conread position: | 285-809 |
| Cow position: | chr17:22590167-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-802 |
| Cow position: | chr17:22452191-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 208 |
| Conread position: | 288-848 |
| Cow position: | chr17:22499373-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 359 |
| Conread position: | 289-650 |
| Cow position: | chr17:41441100-41440739 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 289-809 |
| Cow position: | chr17:22452358-22451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 379 |
| Conread position: | 289-848 |
| Cow position: | chr17:22473357-22473916 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 215 |
| Conread position: | 292-848 |
| Cow position: | chr17:22452271-22451715 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 208 |
| Conread position: | 301-848 |
| Cow position: | chr17:22452514-22451967 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 249 |
| Conread position: | 303-803 |
| Cow position: | chr17:22473206-22473703 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 311-812 |
| Cow position: | chr17:22590309-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-839 |
| Cow position: | chr17:22499419-22498906 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 345-848 |
| Cow position: | chr17:22452386-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 121 |
| Conread position: | 352-812 |
| Cow position: | chr17:22473336-22473796 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 355-775 |
| Cow position: | chr17:41441118-41440698 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 142, 132 |
| Conread position: | 404-812 |
| Cow position: | chr17:22590300-22589892 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 436-848 |
| Cow position: | chr17:22499393-22498981 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-829 |
| Cow position: | chr17:22473201-22473561 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 202, 62 |
| Conread position: | 484-813 |
| Cow position: | chr17:22590304-22589975 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-848 |
| Cow position: | chr17:22499419-22499065 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 13 |
Show alignments to all cow chromosomes.