Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 4-753 |
| Cow position: | chr19:23649696-23650462 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 4-832 |
| Cow position: | chr19:14940214-14941058 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 7-848 |
| Cow position: | chr19:23596678-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 8-848 |
| Cow position: | chr19:23613662-23614519 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 9-819 |
| Cow position: | chr19:23649616-23650444 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 186 |
| Conread position: | 13-852 |
| Cow position: | chr19:23649284-23650141 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 15-644 |
| Cow position: | chr19:14960406-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 15-694 |
| Cow position: | chr19:14959988-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 15-711 |
| Cow position: | chr19:23614425-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 15-812 |
| Cow position: | chr19:23614173-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 15-844 |
| Cow position: | chr19:14960238-14959410 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 15-844 |
| Cow position: | chr19:23613921-23614767 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 126 |
| Conread position: | 17-848 |
| Cow position: | chr19:14940143-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 20-812 |
| Cow position: | chr19:23614010-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 32-848 |
| Cow position: | chr19:23649388-23650221 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 66-728 |
| Cow position: | chr19:14960437-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 152-815 |
| Cow position: | chr19:14939944-14940622 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 162-839 |
| Cow position: | chr19:43570414-43569734 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 163-526 |
| Cow position: | chr19:14959191-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 197-812 |
| Cow position: | chr19:20635632-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 197-815 |
| Cow position: | chr19:20677868-20678501 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 463 |
| Conread position: | 197-836 |
| Cow position: | chr19:20635950-20635314 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 218 |
| Conread position: | 197-837 |
| Cow position: | chr19:14959484-14958841 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 178 |
| Conread position: | 197-844 |
| Cow position: | chr19:23613517-23614179 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 198-606 |
| Cow position: | chr19:14959240-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 199-753 |
| Cow position: | chr19:43570221-43569656 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 209-812 |
| Cow position: | chr19:20677295-20677910 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 132 |
| Conread position: | 280-735 |
| Cow position: | chr19:14948451-14947997 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 47 |
| Conread position: | 280-848 |
| Cow position: | chr19:23649821-23650389 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 100 |
| Conread position: | 284-719 |
| Cow position: | chr19:23597301-23597734 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 5 |
| Conread position: | 285-693 |
| Cow position: | chr19:23650078-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-840 |
| Cow position: | chr19:14959549-14959009 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 190 |
| Conread position: | 285-848 |
| Cow position: | chr19:23597049-23597612 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-809 |
| Cow position: | chr19:23613369-23613891 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 178 |
| Conread position: | 286-813 |
| Cow position: | chr19:20635612-20635085 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 361 |
| Conread position: | 288-590 |
| Cow position: | chr19:14940767-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 211, 207 |
| Conread position: | 288-808 |
| Cow position: | chr19:23613455-23613975 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 288-848 |
| Cow position: | chr19:23614547-23615107 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 289-727 |
| Cow position: | chr19:20678311-20678746 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 370, 354 |
| Conread position: | 289-732 |
| Cow position: | chr19:14915985-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 10, 163 |
| Conread position: | 289-803 |
| Cow position: | chr19:20678227-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 58 |
| Conread position: | 289-809 |
| Cow position: | chr19:20678143-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 186 |
| Conread position: | 289-812 |
| Cow position: | chr19:20678059-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 107 |
| Conread position: | 289-848 |
| Cow position: | chr19:14940012-14940571 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-848 |
| Cow position: | chr19:20677723-20678282 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 290 |
| Conread position: | 289-848 |
| Cow position: | chr19:23597137-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 546, 542 |
| Conread position: | 289-848 |
| Cow position: | chr19:23649746-23650305 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 289-848 |
| Cow position: | chr19:43570358-43569809 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 80 |
| Conread position: | 289-849 |
| Cow position: | chr19:14960367-14959809 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 292-848 |
| Cow position: | chr19:14960448-14959894 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 295 |
| Conread position: | 314-524 |
| Cow position: | chr19:23668548-23668757 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 74 |
| Conread position: | 315-690 |
| Cow position: | chr19:14959192-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 316-823 |
| Cow position: | chr19:14959602-14959105 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 262 |
| Conread position: | 346-808 |
| Cow position: | chr19:20677528-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 347-848 |
| Cow position: | chr19:14960477-14959978 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 106 |
| Conread position: | 349-848 |
| Cow position: | chr19:14939988-14940487 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-848 |
| Cow position: | chr19:23613350-23613847 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 199 |
| Conread position: | 373-809 |
| Cow position: | chr19:20677639-20678075 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 356 |
| Conread position: | 379-848 |
| Cow position: | chr19:14948514-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 24 |
| Conread position: | 404-777 |
| Cow position: | chr19:14959680-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 420-848 |
| Cow position: | chr19:20635646-20635218 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 318 |
| Conread position: | 435-852 |
| Cow position: | chr19:23613350-23613767 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-848 |
| Cow position: | chr19:20677303-20677694 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 550-809 |
| Cow position: | chr19:23613297-23613555 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 251, 0 |
Show alignments to all cow chromosomes.