Cow genome map

Conread name: Ss1.1-rpldo0111_g3.5

Conread position: 4-776
Cow position:
Alignm length: 792
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 146

Conread position: 4-776
Cow position:
Alignm length: 792
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 146

Conread position: 4-778
Cow position:
Alignm length: 795
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 159

Conread position: 4-809
Cow position:
Alignm length: 824
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 688

Conread position: 4-848
Cow position:
Alignm length: 866
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 50

Conread position: 6-815
Cow position:
Alignm length: 831
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 100

Conread position: 8-885
Cow position:
Alignm length: 896
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 253

Conread position: 12-809
Cow position:
Alignm length: 819
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 12-848
Cow position:
Alignm length: 858
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 15-696
Cow position:
Alignm length: 703
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 89

Conread position: 15-804
Cow position:
Alignm length: 812
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 40

Conread position: 15-819
Cow position:
Alignm length: 825
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 122

Conread position: 15-848
Cow position:
Alignm length: 853
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 67

Conread position: 15-848
Cow position:
Alignm length: 853
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 130

Conread position: 15-848
Cow position:
Alignm length: 854
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 130

Conread position: 17-779
Cow position:
Alignm length: 782
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 23-697
Cow position:
Alignm length: 693
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 39

Conread position: 24-804
Cow position:
Alignm length: 800
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 31

Conread position: 24-804
Cow position:
Alignm length: 806
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 31

Conread position: 42-557
Cow position:
Alignm length: 536
Alignm identity: 324
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 18

Conread position: 74-848
Cow position:
Alignm length: 789
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 66

Conread position: 152-777
Cow position:
Alignm length: 644
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 181

Conread position: 157-836
Cow position:
Alignm length: 698
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 23

Conread position: 185-852
Cow position:
Alignm length: 684
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 568

Conread position: 196-838
Cow position:
Alignm length: 652
Alignm identity: 389
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 97

Conread position: 197-812
Cow position:
Alignm length: 635
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 140

Conread position: 197-849
Cow position:
Alignm length: 671
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 213

Conread position: 274-839
Cow position:
Alignm length: 572
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 279-697
Cow position:
Alignm length: 420
Alignm identity: 251
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 175, 11

Conread position: 280-725
Cow position:
Alignm length: 449
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 63

Conread position: 280-733
Cow position:
Alignm length: 460
Alignm identity: 273
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 136, 121

Conread position: 280-773
Cow position:
Alignm length: 494
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 280-809
Cow position:
Alignm length: 533
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 119

Conread position: 280-812
Cow position:
Alignm length: 534
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 301

Conread position: 280-839
Cow position:
Alignm length: 563
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 38

Conread position: 284-803
Cow position:
Alignm length: 522
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 5

Conread position: 285-777
Cow position:
Alignm length: 502
Alignm identity: 309
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 52, 37

Conread position: 285-803
Cow position:
Alignm length: 521
Alignm identity: 305
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 211, 195

Conread position: 285-809
Cow position:
Alignm length: 525
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 515, 0

Conread position: 286-805
Cow position:
Alignm length: 520
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 515, 0

Conread position: 286-848
Cow position:
Alignm length: 566
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 286

Conread position: 288-697
Cow position:
Alignm length: 410
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 288-775
Cow position:
Alignm length: 489
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 478

Conread position: 288-809
Cow position:
Alignm length: 523
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 368

Conread position: 288-839
Cow position:
Alignm length: 552
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 288-839
Cow position:
Alignm length: 552
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 288-848
Cow position:
Alignm length: 565
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 115

Conread position: 288-848
Cow position:
Alignm length: 561
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 288-848
Cow position:
Alignm length: 561
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 289-776
Cow position:
Alignm length: 488
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 289-777
Cow position:
Alignm length: 494
Alignm identity: 297
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 66

Conread position: 289-808
Cow position:
Alignm length: 521
Alignm identity: 309
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 41, 31

Conread position: 289-809
Cow position:
Alignm length: 527
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 98, 117

Conread position: 289-809
Cow position:
Alignm length: 524
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 37

Conread position: 289-809
Cow position:
Alignm length: 529
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 37

Conread position: 289-812
Cow position:
Alignm length: 528
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 116

Conread position: 289-817
Cow position:
Alignm length: 530
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 460, 447

Conread position: 289-852
Cow position:
Alignm length: 564
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 291-727
Cow position:
Alignm length: 439
Alignm identity: 276
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 31

Conread position: 292-812
Cow position:
Alignm length: 523
Alignm identity: 320
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 26, 49

Conread position: 292-816
Cow position:
Alignm length: 525
Alignm identity: 314
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 292-819
Cow position:
Alignm length: 533
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 103

Conread position: 304-821
Cow position:
Alignm length: 521
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 190

Conread position: 306-818
Cow position:
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 37

Conread position: 315-809
Cow position:
Alignm length: 497
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 185

Conread position: 315-813
Cow position:
Alignm length: 501
Alignm identity: 289
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 275, 271

Conread position: 316-809
Cow position:
Alignm length: 497
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 33

Conread position: 325-537
Cow position:
Alignm length: 214
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 78, 84

Conread position: 325-692
Cow position:
Alignm length: 370
Alignm identity: 239
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 75, 83

Conread position: 329-809
Cow position:
Alignm length: 483
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 177

Conread position: 330-836
Cow position:
Alignm length: 510
Alignm identity: 315
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 156, 149

Conread position: 333-812
Cow position:
Alignm length: 497
Alignm identity: 288
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 234, 0

Conread position: 341-525
Cow position:
Alignm length: 187
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 68

Conread position: 342-805
Cow position:
Alignm length: 464
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 0

Conread position: 342-818
Cow position:
Alignm length: 496
Alignm identity: 287
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 21

Conread position: 345-809
Cow position:
Alignm length: 468
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 248

Conread position: 346-725
Cow position:
Alignm length: 384
Alignm identity: 241
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 139, 125

Conread position: 346-812
Cow position:
Alignm length: 470
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 134

Conread position: 349-809
Cow position:
Alignm length: 463
Alignm identity: 288
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 139, 130

Conread position: 350-848
Cow position:
Alignm length: 503
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 45

Conread position: 353-809
Cow position:
Alignm length: 459
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 126

Conread position: 354-809
Cow position:
Alignm length: 460
Alignm identity: 289
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 131

Conread position: 354-809
Cow position:
Alignm length: 460
Alignm identity: 291
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 65, 69

Conread position: 354-812
Cow position:
Alignm length: 460
Alignm identity: 272
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 298, 291

Conread position: 354-815
Cow position:
Alignm length: 465
Alignm identity: 293
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 123, 136

Conread position: 358-643
Cow position:
Alignm length: 287
Alignm identity: 189
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 45

Conread position: 358-776
Cow position:
Alignm length: 422
Alignm identity: 274
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 52, 45

Conread position: 360-725
Cow position:
Alignm length: 372
Alignm identity: 228
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 48, 130

Conread position: 360-818
Cow position:
Alignm length: 459
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 361-806
Cow position:
Alignm length: 446
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 378-809
Cow position:
Alignm length: 436
Alignm identity: 262
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 119

Conread position: 385-848
Cow position:
Alignm length: 471
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 48

Conread position: 401-848
Cow position:
Alignm length: 452
Alignm identity: 282
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 44

Conread position: 414-808
Cow position:
Alignm length: 395
Alignm identity: 249
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 416-851
Cow position:
Alignm length: 436
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 421-848
Cow position:
Alignm length: 429
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 8

Conread position: 429-828
Cow position:
Alignm length: 401
Alignm identity: 261
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 322, 311

Conread position: 451-804
Cow position:
Alignm length: 355
Alignm identity: 230
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 15, 32

Conread position: 451-815
Cow position:
Alignm length: 367
Alignm identity: 226
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 108, 127

Conread position: 485-839
Cow position:
Alignm length: 357
Alignm identity: 233
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 99, 11

Conread position: 497-797
Cow position:
Alignm length: 301
Alignm identity: 172
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 296, 0

Conread position: 497-848
Cow position:
Alignm length: 352
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 528-848
Cow position:
Alignm length: 321
Alignm identity: 209
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 574-848
Cow position:
Alignm length: 275
Alignm identity: 175
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 581-819
Cow position:
Alignm length: 239
Alignm identity: 161
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 582-813
Cow position:
Alignm length: 232
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 601-835
Cow position:
Alignm length: 237
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 162

Show alignments to all cow chromosomes.