Cow genome map

Conread name: Ss1.1-rpldo0111_g3.5

Conread position: 4-560
Cow position:
Alignm length: 578
Alignm identity: 366
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 39, 104

Conread position: 4-693
Cow position:
Alignm length: 705
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 141

Conread position: 13-776
Cow position:
Alignm length: 786
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 13-809
Cow position:
Alignm length: 814
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 193

Conread position: 13-851
Cow position:
Alignm length: 860
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 43

Conread position: 15-264
Cow position:
Alignm length: 253
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 135

Conread position: 17-818
Cow position:
Alignm length: 820
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 470

Conread position: 26-447
Cow position:
Alignm length: 441
Alignm identity: 276
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 29

Conread position: 142-694
Cow position:
Alignm length: 570
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 6

Conread position: 157-512
Cow position:
Alignm length: 374
Alignm identity: 248
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 24

Conread position: 160-848
Cow position:
Alignm length: 705
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 542

Conread position: 162-675
Cow position:
Alignm length: 530
Alignm identity: 327
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 304

Conread position: 163-810
Cow position:
Alignm length: 665
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 420

Conread position: 168-612
Cow position:
Alignm length: 461
Alignm identity: 294
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 76, 83

Conread position: 280-809
Cow position:
Alignm length: 532
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 285-844
Cow position:
Alignm length: 561
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 514

Conread position: 286-647
Cow position:
Alignm length: 362
Alignm identity: 236
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 288-621
Cow position:
Alignm length: 337
Alignm identity: 227
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 192, 183

Conread position: 288-647
Cow position:
Alignm length: 362
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 0

Conread position: 288-674
Cow position:
Alignm length: 389
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 288-711
Cow position:
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 0

Conread position: 288-818
Cow position:
Alignm length: 533
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 208

Conread position: 288-818
Cow position:
Alignm length: 531
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 288-839
Cow position:
Alignm length: 558
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 29

Conread position: 288-844
Cow position:
Alignm length: 558
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 526, 539

Conread position: 288-844
Cow position:
Alignm length: 558
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 75

Conread position: 289-556
Cow position:
Alignm length: 269
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 185, 228

Conread position: 289-705
Cow position:
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 175

Conread position: 289-764
Cow position:
Alignm length: 476
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 289-764
Cow position:
Alignm length: 481
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 155

Conread position: 289-768
Cow position:
Alignm length: 482
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 129

Conread position: 289-776
Cow position:
Alignm length: 489
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 164

Conread position: 289-815
Cow position:
Alignm length: 530
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 199

Conread position: 289-844
Cow position:
Alignm length: 556
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 290-815
Cow position:
Alignm length: 529
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 100

Conread position: 291-781
Cow position:
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 18

Conread position: 292-752
Cow position:
Alignm length: 463
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 14

Conread position: 292-844
Cow position:
Alignm length: 553
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 292-852
Cow position:
Alignm length: 561
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 528, 0

Conread position: 293-812
Cow position:
Alignm length: 521
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 186

Conread position: 321-809
Cow position:
Alignm length: 492
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 77

Conread position: 333-848
Cow position:
Alignm length: 517
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 191

Conread position: 346-777
Cow position:
Alignm length: 432
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 346-836
Cow position:
Alignm length: 491
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 347-640
Cow position:
Alignm length: 295
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 211, 254

Conread position: 347-764
Cow position:
Alignm length: 420
Alignm identity: 269
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 137, 128

Conread position: 347-809
Cow position:
Alignm length: 463
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 352-848
Cow position:
Alignm length: 498
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 24

Conread position: 360-809
Cow position:
Alignm length: 452
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 399

Conread position: 367-839
Cow position:
Alignm length: 473
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 376-812
Cow position:
Alignm length: 437
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 394-848
Cow position:
Alignm length: 456
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 85

Conread position: 406-851
Cow position:
Alignm length: 448
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 18

Conread position: 415-818
Cow position:
Alignm length: 404
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 422-814
Cow position:
Alignm length: 393
Alignm identity: 251
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 429-815
Cow position:
Alignm length: 388
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 225

Conread position: 429-852
Cow position:
Alignm length: 424
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 431-844
Cow position:
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 132

Conread position: 450-812
Cow position:
Alignm length: 365
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 16

Conread position: 499-844
Cow position:
Alignm length: 346
Alignm identity: 213
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 514-839
Cow position:
Alignm length: 326
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 526-764
Cow position:
Alignm length: 240
Alignm identity: 157
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 200, 0

Conread position: 528-848
Cow position:
Alignm length: 321
Alignm identity: 205
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 580-839
Cow position:
Alignm length: 261
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 230, 19

Show alignments to all cow chromosomes.