Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 4-560 |
| Cow position: | chr23:24522761-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 366 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 4-693 |
| Cow position: | chr23:25626338-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 13-776 |
| Cow position: | chr23:24639280-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 13-809 |
| Cow position: | chr23:24639199-24640009 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 193 |
| Conread position: | 13-851 |
| Cow position: | chr23:25626178-25627031 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 15-264 |
| Cow position: | chr23:24546927-24546676 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 17-818 |
| Cow position: | chr23:24560903-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 470 |
| Conread position: | 26-447 |
| Cow position: | chr23:24626302-24626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 142-694 |
| Cow position: | chr23:25660180-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 157-512 |
| Cow position: | chr23:25724084-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 160-848 |
| Cow position: | chr23:25625992-25626692 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 542 |
| Conread position: | 162-675 |
| Cow position: | chr23:25698608-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 304 |
| Conread position: | 163-810 |
| Cow position: | chr23:24547281-24546620 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 420 |
| Conread position: | 168-612 |
| Cow position: | chr23:25626585-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 280-809 |
| Cow position: | chr23:24535948-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 82 |
| Conread position: | 285-844 |
| Cow position: | chr23:24547312-24546753 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 522, 514 |
| Conread position: | 286-647 |
| Cow position: | chr23:24522549-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-621 |
| Cow position: | chr23:24639741-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 192, 183 |
| Conread position: | 288-647 |
| Cow position: | chr23:24654054-24654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 288-674 |
| Cow position: | chr23:25724106-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 41 |
| Conread position: | 288-711 |
| Cow position: | chr23:24626329-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 288-818 |
| Cow position: | chr23:24639237-24639767 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 208 |
| Conread position: | 288-818 |
| Cow position: | chr23:24639405-24639935 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-839 |
| Cow position: | chr23:25698635-25698084 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 288-844 |
| Cow position: | chr23:24560869-24560313 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 539 |
| Conread position: | 288-844 |
| Cow position: | chr23:24639321-24639877 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 289-556 |
| Cow position: | chr23:24521956-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 185, 228 |
| Conread position: | 289-705 |
| Cow position: | chr23:24639658-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 175 |
| Conread position: | 289-764 |
| Cow position: | chr23:25626556-25627028 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 289-764 |
| Cow position: | chr23:25698550-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 155 |
| Conread position: | 289-768 |
| Cow position: | chr23:25660257-25660736 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 289-776 |
| Cow position: | chr23:24536023-24535536 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 164 |
| Conread position: | 289-815 |
| Cow position: | chr23:25660173-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 199 |
| Conread position: | 289-844 |
| Cow position: | chr23:24560700-24560145 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-815 |
| Cow position: | chr23:24522710-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 100 |
| Conread position: | 291-781 |
| Cow position: | chr23:24626251-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 292-752 |
| Cow position: | chr23:24522624-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 292-844 |
| Cow position: | chr23:24547221-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-852 |
| Cow position: | chr23:25626055-25626612 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 0 |
| Conread position: | 293-812 |
| Cow position: | chr23:24522791-24522275 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 186 |
| Conread position: | 321-809 |
| Cow position: | chr23:25698686-25698198 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 333-848 |
| Cow position: | chr23:24639198-24639713 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 191 |
| Conread position: | 346-777 |
| Cow position: | chr23:25660146-25660577 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-836 |
| Cow position: | chr23:24536050-24535560 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 347-640 |
| Cow position: | chr23:24521982-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 211, 254 |
| Conread position: | 347-764 |
| Cow position: | chr23:25724131-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 347-809 |
| Cow position: | chr23:24547334-24546872 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-848 |
| Cow position: | chr23:24522814-24522323 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 360-809 |
| Cow position: | chr23:24654042-24654485 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 399 |
| Conread position: | 367-839 |
| Cow position: | chr23:25625962-25626434 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-812 |
| Cow position: | chr23:24626177-24626601 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 394-848 |
| Cow position: | chr23:25698697-25698243 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 406-851 |
| Cow position: | chr23:24626279-24626724 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 415-818 |
| Cow position: | chr23:24560910-24560507 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-814 |
| Cow position: | chr23:24626141-24626519 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 429-815 |
| Cow position: | chr23:25660145-25660531 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 225 |
| Conread position: | 429-852 |
| Cow position: | chr23:24536051-24535628 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-844 |
| Cow position: | chr23:24547334-24546921 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 450-812 |
| Cow position: | chr23:25724112-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 499-844 |
| Cow position: | chr23:24560910-24560565 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-839 |
| Cow position: | chr23:25660146-25660471 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-764 |
| Cow position: | chr23:24521971-24521732 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 528-848 |
| Cow position: | chr23:24654042-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-839 |
| Cow position: | chr23:24522000-24521741 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 230, 19 |
Show alignments to all cow chromosomes.