Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 4-497 |
| Cow position: | chr24:17077954-17077446 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 146 |
| Conread position: | 15-839 |
| Cow position: | chr24:17036060-17035219 (view UCSC Genome Browser custom track) |
| Alignm length: | 845 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 135 |
| Conread position: | 15-839 |
| Cow position: | chr24:17036312-17035471 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 15-844 |
| Cow position: | chr24:17035892-17035046 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 15-844 |
| Cow position: | chr24:17036480-17035634 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 167 |
| Conread position: | 15-848 |
| Cow position: | chr24:17036228-17035378 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 18-834 |
| Cow position: | chr24:17035554-17034723 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 511 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 20-697 |
| Cow position: | chr24:17070361-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 20-773 |
| Cow position: | chr24:17035719-17034949 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 23-777 |
| Cow position: | chr24:17035800-17035029 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 24-812 |
| Cow position: | chr24:17035967-17035162 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 24-812 |
| Cow position: | chr24:17036387-17035582 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 30-848 |
| Cow position: | chr24:17036547-17035714 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 74-712 |
| Cow position: | chr24:17078134-17077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 268 |
| Conread position: | 199-848 |
| Cow position: | chr24:17036546-17035882 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 285-818 |
| Cow position: | chr24:17078076-17077543 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 210 |
| Conread position: | 288-546 |
| Cow position: | chr24:17013268-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 289-505 |
| Cow position: | chr24:16986451-16986670 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 289-624 |
| Cow position: | chr24:17013185-17013519 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 105 |
| Conread position: | 289-784 |
| Cow position: | chr24:17070564-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-796 |
| Cow position: | chr24:17077988-17077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 0 |
| Conread position: | 289-848 |
| Cow position: | chr24:17070480-17071039 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 184 |
| Conread position: | 292-809 |
| Cow position: | chr24:17078153-17077636 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 452 |
| Conread position: | 292-848 |
| Cow position: | chr24:17078237-17077681 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 371 |
| Conread position: | 296-839 |
| Cow position: | chr24:17070405-17070946 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 346-848 |
| Cow position: | chr24:17070369-17070871 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 350-714 |
| Cow position: | chr24:17013162-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 121 |
| Conread position: | 364-575 |
| Cow position: | chr24:16986442-16986653 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 122, 100 |
| Conread position: | 364-844 |
| Cow position: | chr24:17036615-17036138 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 419-811 |
| Cow position: | chr24:17013147-17013538 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 434-662 |
| Cow position: | chr24:16986428-16986656 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 504-818 |
| Cow position: | chr24:17013148-17013462 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 542-746 |
| Cow position: | chr24:16986452-16986656 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 599-818 |
| Cow position: | chr24:16986425-16986644 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 628-844 |
| Cow position: | chr24:17013188-17013404 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 208, 203 |
Show alignments to all cow chromosomes.