Cow genome map


           Conread name:
           Ss1.1-rpldo0111_g3.5
        

               Conread position:
               1-1019
               

               Cow position:
               
               

               Alignm length:
               1019
               

               Alignm identity:
               922
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               913, 0
               

               Conread position:
               4-725
               

               Cow position:
               
               

               Alignm length:
               737
               

               Alignm identity:
               439
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               129, 28
               

               Conread position:
               8-818
               

               Cow position:
               
               

               Alignm length:
               825
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 48
               

               Conread position:
               9-803
               

               Cow position:
               
               

               Alignm length:
               814
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 749
               

               Conread position:
               10-848
               

               Cow position:
               
               

               Alignm length:
               850
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 145
               

               Conread position:
               15-796
               

               Cow position:
               
               

               Alignm length:
               800
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               15-812
               

               Cow position:
               
               

               Alignm length:
               820
               

               Alignm identity:
               562
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 40
               

               Conread position:
               15-848
               

               Cow position:
               
               

               Alignm length:
               854
               

               Alignm identity:
               536
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 179
               

               Conread position:
               15-848
               

               Cow position:
               
               

               Alignm length:
               854
               

               Alignm identity:
               572
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               32-809
               

               Cow position:
               
               

               Alignm length:
               798
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               36-828
               

               Cow position:
               
               

               Alignm length:
               811
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 116
               

               Conread position:
               57-746
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               429
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               10, 54
               

               Conread position:
               60-805
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 356
               

               Conread position:
               79-848
               

               Cow position:
               
               

               Alignm length:
               786
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 763
               

               Conread position:
               86-818
               

               Cow position:
               
               

               Alignm length:
               750
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 34
               

               Conread position:
               142-606
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 344
               

               Conread position:
               142-848
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               442
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               100, 199
               

               Conread position:
               160-836
               

               Cow position:
               
               

               Alignm length:
               693
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 512
               

               Conread position:
               167-848
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               184-848
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 7
               

               Conread position:
               187-817
               

               Cow position:
               
               

               Alignm length:
               648
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 308
               

               Conread position:
               271-745
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               292
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               10, 135
               

               Conread position:
               282-804
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               284-645
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               171, 5
               

               Conread position:
               285-776
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               467, 450
               

               Conread position:
               285-826
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 63
               

               Conread position:
               285-836
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 120
               

               Conread position:
               285-848
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 195
               

               Conread position:
               286-697
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               286-756
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               122, 111
               

               Conread position:
               287-690
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               108, 123
               

               Conread position:
               287-776
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               464, 452
               

               Conread position:
               288-623
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 36
               

               Conread position:
               288-713
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               288
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               188, 198
               

               Conread position:
               288-719
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               271, 51
               

               Conread position:
               288-797
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               310
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               110, 119
               

               Conread position:
               288-809
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               288-809
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               334
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               63, 50
               

               Conread position:
               288-814
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               29, 35
               

               Conread position:
               288-817
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               379, 363
               

               Conread position:
               288-848
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               530, 539
               

               Conread position:
               289-591
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               210, 199
               

               Conread position:
               289-641
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               187, 207
               

               Conread position:
               289-717
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               379, 367
               

               Conread position:
               289-737
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               55, 38
               

               Conread position:
               289-750
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               279
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               195, 184
               

               Conread position:
               289-751
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               272
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               127, 110
               

               Conread position:
               289-774
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               289-809
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 63
               

               Conread position:
               289-821
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               327
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               275, 287
               

               Conread position:
               289-829
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 479
               

               Conread position:
               289-848
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               338
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               126, 103
               

               Conread position:
               289-848
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               211, 206
               

               Conread position:
               290-813
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 28
               

               Conread position:
               291-560
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               79, 207
               

               Conread position:
               291-809
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 36
               

               Conread position:
               292-610
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               123, 107
               

               Conread position:
               292-713
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               292-714
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               9, 20
               

               Conread position:
               292-744
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               261, 291
               

               Conread position:
               292-764
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 66
               

               Conread position:
               292-764
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               292-776
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               295
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               198, 181
               

               Conread position:
               292-799
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               310
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               111, 103
               

               Conread position:
               303-808
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               303-844
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 44
               

               Conread position:
               321-827
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               346, 53
               

               Conread position:
               323-809
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               315
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               69, 115
               

               Conread position:
               323-818
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 59
               

               Conread position:
               331-620
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               170, 164
               

               Conread position:
               331-753
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 313
               

               Conread position:
               334-839
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               335-681
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               232, 243
               

               Conread position:
               335-706
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               134, 157
               

               Conread position:
               339-779
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               412, 8
               

               Conread position:
               342-848
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 231
               

               Conread position:
               345-803
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               71, 77
               

               Conread position:
               349-690
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               7, 14
               

               Conread position:
               349-818
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               299
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               173, 166
               

               Conread position:
               352-570
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               352-704
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               117, 127
               

               Conread position:
               352-720
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               314, 306
               

               Conread position:
               353-596
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               216, 228
               

               Conread position:
               354-848
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 220
               

               Conread position:
               368-844
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               286
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               192, 202
               

               Conread position:
               371-839
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 55
               

               Conread position:
               379-848
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 22
               

               Conread position:
               403-766
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               239, 0
               

               Conread position:
               404-757
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               102, 97
               

               Conread position:
               406-774
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               17, 89
               

               Conread position:
               409-839
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-776
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               306, 299
               

               Conread position:
               435-765
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               40, 57
               

               Conread position:
               436-805
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               44, 60
               

               Conread position:
               460-785
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               484-815
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               80, 98
               

               Conread position:
               490-818
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               71, 85
               

               Conread position:
               497-844
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               504-724
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               511-833
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               225, 10
               

               Conread position:
               519-848
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               187, 193
               

               Conread position:
               519-848
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               19, 23
               

               Conread position:
               581-848
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               593-808
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.