Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 3-447 |
| Cow position: | chr28:9253155-9253618 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 15-732 |
| Cow position: | chr28:9289983-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 224 |
| Conread position: | 15-817 |
| Cow position: | chr28:7758070-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 267 |
| Conread position: | 15-848 |
| Cow position: | chr28:7757482-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 15-848 |
| Cow position: | chr28:7757734-7758568 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 23-809 |
| Cow position: | chr28:9298891-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 57-707 |
| Cow position: | chr28:7810288-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 290 |
| Conread position: | 89-848 |
| Cow position: | chr28:9298054-9298810 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 441 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 142-791 |
| Cow position: | chr28:7810291-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 246 |
| Conread position: | 264-820 |
| Cow position: | chr28:7810260-7810808 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 273 |
| Conread position: | 284-818 |
| Cow position: | chr28:34673372-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 109, 5 |
| Conread position: | 285-848 |
| Cow position: | chr28:9252952-9253515 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-744 |
| Cow position: | chr28:34695846-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 143, 126 |
| Conread position: | 286-777 |
| Cow position: | chr28:11333867-11333382 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 287-848 |
| Cow position: | chr28:7757273-7757828 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 287-848 |
| Cow position: | chr28:7757351-7757912 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 164 |
| Conread position: | 287-848 |
| Cow position: | chr28:9253038-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-668 |
| Cow position: | chr28:33210248-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 184 |
| Conread position: | 288-682 |
| Cow position: | chr28:34679456-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-805 |
| Cow position: | chr28:9298671-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 288-805 |
| Cow position: | chr28:11334201-11333684 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-815 |
| Cow position: | chr28:9290192-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 288-816 |
| Cow position: | chr28:9253123-9253652 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 288-844 |
| Cow position: | chr28:7757436-7757992 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 530, 538 |
| Conread position: | 288-848 |
| Cow position: | chr28:7810368-7810919 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 157 |
| Conread position: | 288-848 |
| Cow position: | chr28:9252789-9253347 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 102 |
| Conread position: | 289-704 |
| Cow position: | chr28:34696185-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 290-817 |
| Cow position: | chr28:9290112-9290631 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 292-743 |
| Cow position: | chr28:34696104-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 292-815 |
| Cow position: | chr28:11334113-11333590 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-818 |
| Cow position: | chr28:34695936-34696462 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 324 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 292-818 |
| Cow position: | chr28:34696020-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 310-803 |
| Cow position: | chr28:34679600-34679117 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 315 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 252, 54 |
| Conread position: | 311-809 |
| Cow position: | chr28:9252893-9253392 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 313-844 |
| Cow position: | chr28:9299028-9299545 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 522, 158 |
| Conread position: | 320-848 |
| Cow position: | chr28:9252573-9253095 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 462, 13 |
| Conread position: | 325-807 |
| Cow position: | chr28:9289813-9290287 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 333-734 |
| Cow position: | chr28:34695725-34696126 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 250, 245 |
| Conread position: | 335-848 |
| Cow position: | chr28:7757153-7757660 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 346-805 |
| Cow position: | chr28:9298561-9299016 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 107 |
| Conread position: | 350-767 |
| Cow position: | chr28:34673353-34673770 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 402-848 |
| Cow position: | chr28:9289806-9290246 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 245, 77 |
| Conread position: | 415-812 |
| Cow position: | chr28:34679579-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 241, 38 |
| Conread position: | 436-818 |
| Cow position: | chr28:33210228-33210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 198, 204 |
| Conread position: | 451-814 |
| Cow position: | chr28:11334206-11333843 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 186, 217 |
| Conread position: | 451-815 |
| Cow position: | chr28:34673370-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 110, 122 |
| Conread position: | 459-812 |
| Cow position: | chr28:9298590-9298941 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 516-848 |
| Cow position: | chr28:33210223-33210556 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 628-848 |
| Cow position: | chr28:7810288-7810508 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 88, 102 |
Show alignments to all cow chromosomes.