Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 3-766 |
| Cow position: | chr7:11601217-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 247 |
| Conread position: | 7-777 |
| Cow position: | chr7:3180091-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 10-734 |
| Cow position: | chr7:1014748-1015491 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 10-848 |
| Cow position: | chr7:1014081-1014931 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 15-565 |
| Cow position: | chr7:1439707-1440271 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 15-786 |
| Cow position: | chr7:42879042-42878251 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 15-809 |
| Cow position: | chr7:1439452-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 15-848 |
| Cow position: | chr7:3179763-3180613 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 15-848 |
| Cow position: | chr7:3179931-3180781 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 15-848 |
| Cow position: | chr7:3180015-3180864 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 15-848 |
| Cow position: | chr7:42879126-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 17-473 |
| Cow position: | chr7:18390314-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 136 |
| Conread position: | 24-809 |
| Cow position: | chr7:42879283-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 156 |
| Conread position: | 84-848 |
| Cow position: | chr7:1014578-1015351 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 96-848 |
| Cow position: | chr7:1014668-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 326 |
| Conread position: | 182-809 |
| Cow position: | chr7:11601204-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 197-805 |
| Cow position: | chr7:8243217-8243838 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 388 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 197-809 |
| Cow position: | chr7:8325067-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 386 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 69, 228 |
| Conread position: | 197-812 |
| Cow position: | chr7:8324983-8325613 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 197-831 |
| Cow position: | chr7:11601105-11600456 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 205-828 |
| Cow position: | chr7:8277854-8278490 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 218 |
| Conread position: | 280-707 |
| Cow position: | chr7:11434958-11434545 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 280-728 |
| Cow position: | chr7:8278280-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 114 |
| Conread position: | 288-744 |
| Cow position: | chr7:18390350-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 367 |
| Conread position: | 288-848 |
| Cow position: | chr7:1439490-1440050 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 95 |
| Conread position: | 288-848 |
| Cow position: | chr7:42879424-42878864 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 156 |
| Conread position: | 289-565 |
| Cow position: | chr7:1438438-1438714 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 199, 210 |
| Conread position: | 289-640 |
| Cow position: | chr7:8325930-8326276 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 289-803 |
| Cow position: | chr7:8325426-8325940 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 289-809 |
| Cow position: | chr7:8277365-8277885 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 273, 284 |
| Conread position: | 289-812 |
| Cow position: | chr7:8278037-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 289-812 |
| Cow position: | chr7:8324838-8325361 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 126 |
| Conread position: | 289-818 |
| Cow position: | chr7:18390267-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 450 |
| Conread position: | 290-641 |
| Cow position: | chr7:1438355-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 290-809 |
| Cow position: | chr7:8243408-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 290-834 |
| Cow position: | chr7:8277618-8278161 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 290-836 |
| Cow position: | chr7:18390016-18390562 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 186 |
| Conread position: | 291-812 |
| Cow position: | chr7:8242990-8243510 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 322 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 286, 293 |
| Conread position: | 291-848 |
| Cow position: | chr7:42879253-42878696 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 292-686 |
| Cow position: | chr7:11600827-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 174 |
| Conread position: | 292-809 |
| Cow position: | chr7:8324757-8325274 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 292-815 |
| Cow position: | chr7:8277704-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 278 |
| Conread position: | 292-848 |
| Cow position: | chr7:3179721-3180277 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 189 |
| Conread position: | 292-852 |
| Cow position: | chr7:18390186-18390746 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 181 |
| Conread position: | 293-809 |
| Cow position: | chr7:1438190-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 296-848 |
| Cow position: | chr7:1439410-1439967 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 302-741 |
| Cow position: | chr7:1438283-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 303-831 |
| Cow position: | chr7:11601152-11600624 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 92 |
| Conread position: | 304-809 |
| Cow position: | chr7:42879324-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 327-812 |
| Cow position: | chr7:8243610-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 328-848 |
| Cow position: | chr7:18389970-18390490 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 345-738 |
| Cow position: | chr7:1439884-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 345-848 |
| Cow position: | chr7:18390155-18390658 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 61 |
| Conread position: | 346-599 |
| Cow position: | chr7:11434493-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 346-643 |
| Cow position: | chr7:8325819-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-724 |
| Cow position: | chr7:8325903-8326276 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 154, 134 |
| Conread position: | 346-725 |
| Cow position: | chr7:8325735-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 346-726 |
| Cow position: | chr7:8243213-8243592 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 346-787 |
| Cow position: | chr7:8277926-8278367 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 346-812 |
| Cow position: | chr7:8242877-8243343 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 346-812 |
| Cow position: | chr7:8325567-8326033 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 349-809 |
| Cow position: | chr7:8243132-8243591 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 349-809 |
| Cow position: | chr7:8324730-8325189 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 231 |
| Conread position: | 349-812 |
| Cow position: | chr7:8277257-8277720 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 349-848 |
| Cow position: | chr7:11601190-11600691 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 351-791 |
| Cow position: | chr7:11434971-11434545 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 318, 124 |
| Conread position: | 353-807 |
| Cow position: | chr7:8277597-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 358-809 |
| Cow position: | chr7:8242805-8243256 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 142, 113 |
| Conread position: | 361-848 |
| Cow position: | chr7:3179706-3180193 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 452 |
| Conread position: | 405-848 |
| Cow position: | chr7:3179666-3180109 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-831 |
| Cow position: | chr7:11601210-11600792 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-699 |
| Cow position: | chr7:11434508-11434224 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 252, 239 |
| Conread position: | 421-798 |
| Cow position: | chr7:11601285-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 439-812 |
| Cow position: | chr7:8324736-8325109 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 478-848 |
| Cow position: | chr7:3179655-3180025 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 505-809 |
| Cow position: | chr7:11601285-11600982 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 516-809 |
| Cow position: | chr7:8277256-8277549 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 516-812 |
| Cow position: | chr7:8324729-8325025 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 53 |
Show alignments to all cow chromosomes.