Cow genome map
| Conread name: | Ss1.1-rpldo0111_g3.5 |
| Conread position: | 4-729 |
| Cow position: | chrX:25324944-25324206 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 146 |
| Conread position: | 6-848 |
| Cow position: | chrX:29045601-29044764 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 9-848 |
| Cow position: | chrX:25325779-25324923 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 174 |
| Conread position: | 13-848 |
| Cow position: | chrX:25309701-25310554 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 15-625 |
| Cow position: | chrX:29045278-29044651 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 15-713 |
| Cow position: | chrX:25309872-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 15-781 |
| Cow position: | chrX:25325017-25324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 15-848 |
| Cow position: | chrX:25325101-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 15-848 |
| Cow position: | chrX:25325185-25324335 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 15-848 |
| Cow position: | chrX:25325521-25324671 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 17-797 |
| Cow position: | chrX:25309790-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 25-844 |
| Cow position: | chrX:25325595-25324759 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 104-809 |
| Cow position: | chrX:25326018-25325298 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 185-719 |
| Cow position: | chrX:29045913-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 80 |
| Conread position: | 286-848 |
| Cow position: | chrX:29045242-29044680 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 287-814 |
| Cow position: | chrX:13826845-13826318 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 289-814 |
| Cow position: | chrX:14181537-14181012 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 290-809 |
| Cow position: | chrX:12627544-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 291-790 |
| Cow position: | chrX:29045153-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 292-725 |
| Cow position: | chrX:13826924-13826491 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 310-848 |
| Cow position: | chrX:25325881-25325343 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 84 |
| Conread position: | 330-726 |
| Cow position: | chrX:12627667-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 349-803 |
| Cow position: | chrX:29045830-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 380 |
| Conread position: | 362-848 |
| Cow position: | chrX:25325997-25325511 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 366-747 |
| Cow position: | chrX:13826934-13826554 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 374-848 |
| Cow position: | chrX:25309660-25310134 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 415-764 |
| Cow position: | chrX:14181327-14180978 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 426-809 |
| Cow position: | chrX:29045837-29045455 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 510-848 |
| Cow position: | chrX:29045837-29045499 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.