Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 309-834 |
| Cow position: | chr17:22553191-22552666 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 388 |
| Conread position: | 310-569 |
| Cow position: | chr17:22589432-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-833 |
| Cow position: | chr17:22499058-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 312-834 |
| Cow position: | chr17:22553022-22552498 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 233 |
| Conread position: | 313-687 |
| Cow position: | chr17:22589597-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 207, 220 |
| Conread position: | 313-760 |
| Cow position: | chr17:22551927-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 231 |
| Conread position: | 313-762 |
| Cow position: | chr17:22473503-22473953 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 213 |
| Conread position: | 313-822 |
| Cow position: | chr17:22552935-22552426 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 313-828 |
| Cow position: | chr17:22552179-22551664 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 385 |
| Conread position: | 313-829 |
| Cow position: | chr17:22552683-22552167 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 223 |
| Conread position: | 313-834 |
| Cow position: | chr17:22552095-22551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 378 |
| Conread position: | 313-834 |
| Cow position: | chr17:22552347-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 230 |
| Conread position: | 313-834 |
| Cow position: | chr17:22552515-22551994 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 313-834 |
| Cow position: | chr17:22552851-22552330 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 313-834 |
| Cow position: | chr17:22589765-22589244 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 378 |
| Conread position: | 313-834 |
| Cow position: | chr17:22590185-22589664 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 309 |
| Conread position: | 313-836 |
| Cow position: | chr17:22498974-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 0 |
| Conread position: | 313-837 |
| Cow position: | chr17:22452212-22451688 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 229 |
| Conread position: | 313-837 |
| Cow position: | chr17:22452296-22451772 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 202 |
| Conread position: | 313-840 |
| Cow position: | chr17:22499310-22498783 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 224 |
| Conread position: | 313-840 |
| Cow position: | chr17:22589933-22589406 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-836 |
| Cow position: | chr17:22473336-22473858 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 378 |
| Conread position: | 314-837 |
| Cow position: | chr17:22499141-22498618 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 201 |
| Conread position: | 314-840 |
| Cow position: | chr17:22553102-22552576 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 316 |
| Conread position: | 316-822 |
| Cow position: | chr17:22452041-22451537 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 209 |
| Conread position: | 317-834 |
| Cow position: | chr17:22590263-22589748 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 14 |
| Conread position: | 325-834 |
| Cow position: | chr17:22589837-22589328 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 215 |
| Conread position: | 327-835 |
| Cow position: | chr17:22452366-22451858 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-836 |
| Cow position: | chr17:22499212-22498703 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 367 |
| Conread position: | 327-840 |
| Cow position: | chr17:22552249-22551736 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 328-836 |
| Cow position: | chr17:22590002-22589494 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 225 |
| Conread position: | 329-819 |
| Cow position: | chr17:22589665-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 329-828 |
| Cow position: | chr17:22552751-22552252 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 463 |
| Conread position: | 329-832 |
| Cow position: | chr17:22452112-22451609 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 331 |
| Conread position: | 329-834 |
| Cow position: | chr17:22552415-22551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 329-834 |
| Cow position: | chr17:22590085-22589580 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 303 |
| Conread position: | 329-840 |
| Cow position: | chr17:22473267-22473778 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-840 |
| Cow position: | chr17:22499378-22498867 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 363 |
| Conread position: | 338-693 |
| Cow position: | chr17:41440677-41440322 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 344-834 |
| Cow position: | chr17:22473202-22473688 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 362-834 |
| Cow position: | chr17:22590304-22589832 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 175 |
| Conread position: | 368-834 |
| Cow position: | chr17:22452409-22451943 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 429 |
| Conread position: | 377-834 |
| Cow position: | chr17:22551947-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 320 |
| Conread position: | 393-834 |
| Cow position: | chr17:22499398-22498957 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 301 |
| Conread position: | 450-840 |
| Cow position: | chr17:22452411-22452021 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 469-840 |
| Cow position: | chr17:22473242-22473610 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 546-835 |
| Cow position: | chr17:22553122-22552833 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 156, 151 |
| Conread position: | 561-836 |
| Cow position: | chr17:22499398-22499123 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 625-840 |
| Cow position: | chr17:22499418-22499203 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 12 |
Show alignments to all cow chromosomes.