Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 298-840 |
| Cow position: | chr19:23613336-23613877 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 298-840 |
| Cow position: | chr19:23649373-23649915 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-823 |
| Cow position: | chr19:14960227-14959715 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 74 |
| Conread position: | 311-840 |
| Cow position: | chr19:20677617-20678144 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 15 |
| Conread position: | 311-840 |
| Cow position: | chr19:23613432-23613961 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 128 |
| Conread position: | 311-840 |
| Cow position: | chr19:23613600-23614129 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 305 |
| Conread position: | 311-840 |
| Cow position: | chr19:43570463-43569947 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 312-730 |
| Cow position: | chr19:43570055-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 0 |
| Conread position: | 312-836 |
| Cow position: | chr19:23613853-23614377 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 382 |
| Conread position: | 312-840 |
| Cow position: | chr19:14940409-14940937 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 222 |
| Conread position: | 312-840 |
| Cow position: | chr19:14959651-14959133 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 313-580 |
| Cow position: | chr19:23597451-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 313-643 |
| Cow position: | chr19:14940746-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 206, 197 |
| Conread position: | 313-648 |
| Cow position: | chr19:14959156-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 313, 39 |
| Conread position: | 313-657 |
| Cow position: | chr19:23597367-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 311 |
| Conread position: | 313-689 |
| Cow position: | chr19:20678373-20678746 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 223 |
| Conread position: | 313-689 |
| Cow position: | chr19:23597283-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 222 |
| Conread position: | 313-696 |
| Cow position: | chr19:14948381-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 311 |
| Conread position: | 313-740 |
| Cow position: | chr19:14916131-14916543 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 313-803 |
| Cow position: | chr19:14940578-14941068 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 199 |
| Conread position: | 313-824 |
| Cow position: | chr19:23649976-23650487 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 224 |
| Conread position: | 313-829 |
| Cow position: | chr19:23649892-23650408 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 217 |
| Conread position: | 313-834 |
| Cow position: | chr19:14940242-14940763 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-834 |
| Cow position: | chr19:14940494-14941015 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 469 |
| Conread position: | 313-834 |
| Cow position: | chr19:14959483-14958977 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 313-834 |
| Cow position: | chr19:23613938-23614459 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-836 |
| Cow position: | chr19:20635631-20635108 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 380 |
| Conread position: | 313-836 |
| Cow position: | chr19:23613518-23614041 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-836 |
| Cow position: | chr19:23614526-23615049 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 223 |
| Conread position: | 313-836 |
| Cow position: | chr19:23614610-23615131 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 313-836 |
| Cow position: | chr19:23649472-23649995 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 371 |
| Conread position: | 313-838 |
| Cow position: | chr19:23649640-23650165 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-839 |
| Cow position: | chr19:23649556-23650082 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 221 |
| Conread position: | 313-840 |
| Cow position: | chr19:14940074-14940601 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-840 |
| Cow position: | chr19:14959887-14959376 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 313-840 |
| Cow position: | chr19:20635547-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 126 |
| Conread position: | 313-840 |
| Cow position: | chr19:20678121-20678648 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 313-840 |
| Cow position: | chr19:23597115-23597642 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 470 |
| Conread position: | 313-840 |
| Cow position: | chr19:23613686-23614213 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 225 |
| Conread position: | 313-840 |
| Cow position: | chr19:23613770-23614297 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 222 |
| Conread position: | 313-840 |
| Cow position: | chr19:23614106-23614633 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 225 |
| Conread position: | 313-840 |
| Cow position: | chr19:23614190-23614717 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 197 |
| Conread position: | 313-840 |
| Cow position: | chr19:23614358-23614885 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 313-840 |
| Cow position: | chr19:23649304-23649831 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 393 |
| Conread position: | 314-835 |
| Cow position: | chr19:23614275-23614796 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 314-835 |
| Cow position: | chr19:43570221-43569702 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 216 |
| Conread position: | 314-840 |
| Cow position: | chr19:14940327-14940853 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 299 |
| Conread position: | 314-840 |
| Cow position: | chr19:20677954-20678480 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 496 |
| Conread position: | 314-840 |
| Cow position: | chr19:23614023-23614549 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 377 |
| Conread position: | 315-823 |
| Cow position: | chr19:14960387-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 222 |
| Conread position: | 315-840 |
| Cow position: | chr19:23597032-23597558 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 320-837 |
| Cow position: | chr19:20677878-20678393 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 322-840 |
| Cow position: | chr19:20678214-20678729 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 370 |
| Conread position: | 324-834 |
| Cow position: | chr19:43570369-43569869 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 325-766 |
| Cow position: | chr19:14948452-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 325-839 |
| Cow position: | chr19:23649820-23650334 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 176 |
| Conread position: | 327-840 |
| Cow position: | chr19:20677463-20677976 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 328-565 |
| Cow position: | chr19:14959063-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 204, 197 |
| Conread position: | 329-832 |
| Cow position: | chr19:23597215-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 464 |
| Conread position: | 329-833 |
| Cow position: | chr19:14915979-14916470 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 329-840 |
| Cow position: | chr19:14940006-14940517 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-840 |
| Cow position: | chr19:14940174-14940685 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 459 |
| Conread position: | 329-840 |
| Cow position: | chr19:23614458-23614969 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 194 |
| Conread position: | 329-840 |
| Cow position: | chr19:23649740-23650251 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 206 |
| Conread position: | 331-834 |
| Cow position: | chr19:14960037-14959550 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 206 |
| Conread position: | 334-834 |
| Cow position: | chr19:14959712-14959223 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 61 |
| Conread position: | 338-832 |
| Cow position: | chr19:43570278-43569787 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 376-819 |
| Cow position: | chr19:14948485-14948043 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 82 |
| Conread position: | 376-837 |
| Cow position: | chr19:20635736-20635275 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 401, 408 |
| Conread position: | 377-840 |
| Cow position: | chr19:14960409-14959948 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 377-840 |
| Cow position: | chr19:23649284-23649747 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-820 |
| Cow position: | chr19:14959257-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 380-834 |
| Cow position: | chr19:23596849-23597300 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 382-840 |
| Cow position: | chr19:14915869-14916320 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 301 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 382-840 |
| Cow position: | chr19:20635646-20635188 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 315 |
| Conread position: | 389-831 |
| Cow position: | chr19:14915956-14916395 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 395-840 |
| Cow position: | chr19:14939988-14940433 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-840 |
| Cow position: | chr19:14960475-14960032 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 142 |
| Conread position: | 416-840 |
| Cow position: | chr19:20677303-20677724 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 418-823 |
| Cow position: | chr19:14959712-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 450-840 |
| Cow position: | chr19:23596834-23597222 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 9, 198 |
| Conread position: | 451-834 |
| Cow position: | chr19:20635745-20635362 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 453-840 |
| Cow position: | chr19:14948492-14948106 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 536-840 |
| Cow position: | chr19:14939962-14940265 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 168, 12 |
Show alignments to all cow chromosomes.