Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 287-834 |
| Cow position: | chr23:24626126-24626661 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 298-770 |
| Cow position: | chr23:24522145-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 390, 17 |
| Conread position: | 307-771 |
| Cow position: | chr23:24535883-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 0 |
| Conread position: | 308-693 |
| Cow position: | chr23:24522573-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 225 |
| Conread position: | 308-840 |
| Cow position: | chr23:24560727-24560195 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 387 |
| Conread position: | 310-707 |
| Cow position: | chr23:24654031-24654429 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 7 |
| Conread position: | 310-840 |
| Cow position: | chr23:25626363-25626890 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 220 |
| Conread position: | 311-609 |
| Cow position: | chr23:24522486-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 230 |
| Conread position: | 311-823 |
| Cow position: | chr23:25626532-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 312-835 |
| Cow position: | chr23:24547331-24546808 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-835 |
| Cow position: | chr23:24639551-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 451 |
| Conread position: | 312-840 |
| Cow position: | chr23:24560891-24560363 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 313-582 |
| Cow position: | chr23:24546910-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-672 |
| Cow position: | chr23:24626392-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 0 |
| Conread position: | 313-726 |
| Cow position: | chr23:24547078-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-740 |
| Cow position: | chr23:25660319-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 313-759 |
| Cow position: | chr23:25626615-25627062 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 213 |
| Conread position: | 313-822 |
| Cow position: | chr23:24535961-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 370 |
| Conread position: | 313-835 |
| Cow position: | chr23:25626198-25626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 313-840 |
| Cow position: | chr23:24547246-24546719 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-840 |
| Cow position: | chr23:24639300-24639827 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 213 |
| Conread position: | 313-840 |
| Cow position: | chr23:25660151-25660678 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 217 |
| Conread position: | 314-742 |
| Cow position: | chr23:24560553-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 384 |
| Conread position: | 314-801 |
| Cow position: | chr23:25698571-25698084 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 226, 216 |
| Conread position: | 314-815 |
| Cow position: | chr23:25660236-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 473 |
| Conread position: | 314-823 |
| Cow position: | chr23:24547161-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 381 |
| Conread position: | 314-823 |
| Cow position: | chr23:24560637-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 210 |
| Conread position: | 314-835 |
| Cow position: | chr23:25724042-25723524 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 216, 223 |
| Conread position: | 314-840 |
| Cow position: | chr23:24560805-24560279 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 470 |
| Conread position: | 320-840 |
| Cow position: | chr23:25626039-25626557 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 12 |
| Conread position: | 323-637 |
| Cow position: | chr23:25698394-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 326-835 |
| Cow position: | chr23:25626127-25626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 407 |
| Conread position: | 326-840 |
| Cow position: | chr23:24536032-24535518 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 444 |
| Conread position: | 326-840 |
| Cow position: | chr23:24639229-24639743 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 327-757 |
| Cow position: | chr23:24626322-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 327-835 |
| Cow position: | chr23:24639398-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 327-837 |
| Cow position: | chr23:25626464-25626971 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 327-840 |
| Cow position: | chr23:24522719-24522209 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 109 |
| Conread position: | 327-840 |
| Cow position: | chr23:25698642-25698129 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 329-743 |
| Cow position: | chr23:25724111-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 0 |
| Conread position: | 329-834 |
| Cow position: | chr23:24639484-24639989 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 369 |
| Conread position: | 333-834 |
| Cow position: | chr23:25625966-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 377-836 |
| Cow position: | chr23:25698676-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 392-834 |
| Cow position: | chr23:25660146-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 224 |
| Conread position: | 392-840 |
| Cow position: | chr23:24626303-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 395-836 |
| Cow position: | chr23:25625946-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 21 |
| Conread position: | 396-771 |
| Cow position: | chr23:24522569-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 301 |
| Conread position: | 396-840 |
| Cow position: | chr23:24536046-24535602 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-840 |
| Cow position: | chr23:24547330-24546887 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-835 |
| Cow position: | chr23:24522814-24522382 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 399-836 |
| Cow position: | chr23:24626154-24626579 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 406-767 |
| Cow position: | chr23:24654042-24654403 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-840 |
| Cow position: | chr23:24639226-24639659 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-810 |
| Cow position: | chr23:25724116-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 424-840 |
| Cow position: | chr23:25625889-25626305 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 452-810 |
| Cow position: | chr23:25698685-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 85 |
| Conread position: | 468-840 |
| Cow position: | chr23:24560903-24560531 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-840 |
| Cow position: | chr23:25660146-25660510 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 236 |
| Conread position: | 482-837 |
| Cow position: | chr23:24522814-24522464 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 490-840 |
| Cow position: | chr23:24639225-24639575 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 491-833 |
| Cow position: | chr23:24654043-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-838 |
| Cow position: | chr23:25724116-25723770 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-840 |
| Cow position: | chr23:25698686-25698381 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 559-840 |
| Cow position: | chr23:24536051-24535770 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 559-840 |
| Cow position: | chr23:25660145-25660426 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 575-840 |
| Cow position: | chr23:24654043-24654308 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-836 |
| Cow position: | chr23:25698699-25698469 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 620-840 |
| Cow position: | chr23:24626279-24626499 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 18 |
Show alignments to all cow chromosomes.