Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 166-823 |
| Cow position: | chr28:7758159-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 548 |
| Conread position: | 307-817 |
| Cow position: | chr28:7758401-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 203, 225 |
| Conread position: | 308-837 |
| Cow position: | chr28:7757410-7757939 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 475 |
| Conread position: | 312-583 |
| Cow position: | chr28:7810673-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-694 |
| Cow position: | chr28:9290334-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 312-837 |
| Cow position: | chr28:7757168-7757687 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 330 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 313-699 |
| Cow position: | chr28:34673522-34673908 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 127 |
| Conread position: | 313-770 |
| Cow position: | chr28:9290171-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 219, 39 |
| Conread position: | 313-771 |
| Cow position: | chr28:9253186-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 313-782 |
| Cow position: | chr28:7757919-7758388 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 389, 384 |
| Conread position: | 313-823 |
| Cow position: | chr28:9253102-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 384 |
| Conread position: | 313-837 |
| Cow position: | chr28:9253018-9253542 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 224 |
| Conread position: | 313-840 |
| Cow position: | chr28:7757499-7758026 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 384 |
| Conread position: | 313-840 |
| Cow position: | chr28:9298400-9298923 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 205, 77 |
| Conread position: | 314-691 |
| Cow position: | chr28:11333549-11333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 212, 83 |
| Conread position: | 314-736 |
| Cow position: | chr28:33210228-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 314-810 |
| Cow position: | chr28:7757836-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 314-827 |
| Cow position: | chr28:7757584-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 383 |
| Conread position: | 314-827 |
| Cow position: | chr28:9299221-9299728 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 299 |
| Conread position: | 314-832 |
| Cow position: | chr28:9299067-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 119 |
| Conread position: | 314-834 |
| Cow position: | chr28:11333885-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 372 |
| Conread position: | 314-834 |
| Cow position: | chr28:11334053-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 314-835 |
| Cow position: | chr28:11334137-11333616 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 314-837 |
| Cow position: | chr28:7810432-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 93 |
| Conread position: | 314-838 |
| Cow position: | chr28:7758172-7758680 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 314-838 |
| Cow position: | chr28:34695996-34696520 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 216, 223 |
| Conread position: | 314-840 |
| Cow position: | chr28:7757668-7758194 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 383 |
| Conread position: | 314-840 |
| Cow position: | chr28:7810348-7810865 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 187 |
| Conread position: | 315-790 |
| Cow position: | chr28:34695829-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 223 |
| Conread position: | 317-814 |
| Cow position: | chr28:11333966-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 323-836 |
| Cow position: | chr28:9290099-9290604 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 24 |
| Conread position: | 325-812 |
| Cow position: | chr28:34679549-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 168 |
| Conread position: | 325-840 |
| Cow position: | chr28:9298828-9299327 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 166 |
| Conread position: | 326-621 |
| Cow position: | chr28:34696260-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 204, 223 |
| Conread position: | 326-837 |
| Cow position: | chr28:11333705-11333194 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 185, 206 |
| Conread position: | 327-829 |
| Cow position: | chr28:34673368-34673870 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 327-835 |
| Cow position: | chr28:9298664-9299168 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 327-837 |
| Cow position: | chr28:11334208-11333698 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 329-766 |
| Cow position: | chr28:9298749-9299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 197, 65 |
| Conread position: | 331-840 |
| Cow position: | chr28:9252952-9253461 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-836 |
| Cow position: | chr28:9298252-9298752 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 308, 57 |
| Conread position: | 333-833 |
| Cow position: | chr28:7810283-7810774 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 254 |
| Conread position: | 333-840 |
| Cow position: | chr28:7757771-7758278 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 364 |
| Conread position: | 334-777 |
| Cow position: | chr28:9290272-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 334-835 |
| Cow position: | chr28:7757352-7757853 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 335-835 |
| Cow position: | chr28:34695765-34696265 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 221, 203 |
| Conread position: | 336-840 |
| Cow position: | chr28:9299006-9299495 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 27 |
| Conread position: | 361-840 |
| Cow position: | chr28:34679595-34679126 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 101, 49 |
| Conread position: | 362-840 |
| Cow position: | chr28:9252898-9253377 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 377-836 |
| Cow position: | chr28:7810252-7810693 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 380-836 |
| Cow position: | chr28:9289983-9290437 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 225 |
| Conread position: | 394-798 |
| Cow position: | chr28:33210223-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 209 |
| Conread position: | 397-834 |
| Cow position: | chr28:7758323-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 216 |
| Conread position: | 405-771 |
| Cow position: | chr28:34673362-34673728 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 215, 206 |
| Conread position: | 407-835 |
| Cow position: | chr28:11334212-11333784 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 223, 206 |
| Conread position: | 478-836 |
| Cow position: | chr28:33210223-33210583 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 485-835 |
| Cow position: | chr28:34695831-34696181 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 137 |
| Conread position: | 499-840 |
| Cow position: | chr28:7757187-7757522 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 47 |
Show alignments to all cow chromosomes.