Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 175-628 |
| Cow position: | chr3:16020603-16020151 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 312-729 |
| Cow position: | chr3:62721991-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 221 |
| Conread position: | 312-837 |
| Cow position: | chr3:62742360-62742880 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 313-743 |
| Cow position: | chr3:68027343-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 297 |
| Conread position: | 313-801 |
| Cow position: | chr3:68045936-68046423 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 297 |
| Conread position: | 313-823 |
| Cow position: | chr3:62722074-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 213 |
| Conread position: | 313-834 |
| Cow position: | chr3:68027091-68027612 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-835 |
| Cow position: | chr3:62742613-62743114 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 28 |
| Conread position: | 313-837 |
| Cow position: | chr3:62722158-62721634 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-840 |
| Cow position: | chr3:62742860-62743366 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 146 |
| Conread position: | 314-642 |
| Cow position: | chr3:62743176-62743504 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-810 |
| Cow position: | chr3:68045853-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 314-827 |
| Cow position: | chr3:68027260-68027770 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 381 |
| Conread position: | 314-838 |
| Cow position: | chr3:68045685-68046209 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 213 |
| Conread position: | 314-840 |
| Cow position: | chr3:68027176-68027702 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 397 |
| Conread position: | 314-840 |
| Cow position: | chr3:68045769-68046295 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 468 |
| Conread position: | 315-840 |
| Cow position: | chr3:62742449-62742968 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 11 |
| Conread position: | 317-823 |
| Cow position: | chr3:62742533-62743030 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 108 |
| Conread position: | 323-840 |
| Cow position: | chr3:62722316-62721799 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 377 |
| Conread position: | 325-836 |
| Cow position: | chr3:62742290-62742795 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 64 |
| Conread position: | 329-836 |
| Cow position: | chr3:62722226-62721719 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 208 |
| Conread position: | 329-840 |
| Cow position: | chr3:77351141-77350641 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 332-738 |
| Cow position: | chr3:62743110-62743515 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 190, 199 |
| Conread position: | 334-834 |
| Cow position: | chr3:62743033-62743525 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 82 |
| Conread position: | 336-834 |
| Cow position: | chr3:62722387-62721889 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 361-837 |
| Cow position: | chr3:62742241-62742714 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 377-840 |
| Cow position: | chr3:68027071-68027534 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-840 |
| Cow position: | chr3:68045664-68046127 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 239 |
| Conread position: | 383-737 |
| Cow position: | chr3:77350927-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 389-647 |
| Cow position: | chr3:16020465-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 390-836 |
| Cow position: | chr3:68027000-68027446 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 316 |
| Conread position: | 396-836 |
| Cow position: | chr3:68045599-68046039 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-840 |
| Cow position: | chr3:62722357-62721967 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 453-840 |
| Cow position: | chr3:77351269-77350890 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 455-840 |
| Cow position: | chr3:68026981-68027366 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 455-840 |
| Cow position: | chr3:68045574-68045959 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 461-840 |
| Cow position: | chr3:62742258-62742636 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 471-728 |
| Cow position: | chr3:16020467-16020217 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 58 |
| Conread position: | 514-838 |
| Cow position: | chr3:62742229-62742550 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 555-820 |
| Cow position: | chr3:16020467-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 639-840 |
| Cow position: | chr3:16020467-16020273 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.