Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 307-700 |
| Cow position: | chr7:1439884-1440275 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 134, 87 |
| Conread position: | 308-693 |
| Cow position: | chr7:1438327-1438712 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-772 |
| Cow position: | chr7:1439802-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 60 |
| Conread position: | 310-835 |
| Cow position: | chr7:1014683-1015208 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 311 |
| Conread position: | 311-835 |
| Cow position: | chr7:42879279-42878755 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 386 |
| Conread position: | 313-650 |
| Cow position: | chr7:11600768-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 331, 0 |
| Conread position: | 313-655 |
| Cow position: | chr7:42878605-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-758 |
| Cow position: | chr7:8325908-8326348 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 142, 129 |
| Conread position: | 313-773 |
| Cow position: | chr7:8243637-8244094 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 379, 358 |
| Conread position: | 313-824 |
| Cow position: | chr7:3180368-3180878 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 393 |
| Conread position: | 313-829 |
| Cow position: | chr7:42878857-42878341 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 220 |
| Conread position: | 313-832 |
| Cow position: | chr7:1014938-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 313-832 |
| Cow position: | chr7:8278099-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 329 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 149, 134 |
| Conread position: | 313-832 |
| Cow position: | chr7:18390245-18390764 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 480 |
| Conread position: | 313-833 |
| Cow position: | chr7:8277931-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 313-835 |
| Cow position: | chr7:8325152-8325674 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 134 |
| Conread position: | 313-835 |
| Cow position: | chr7:42878941-42878419 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 220 |
| Conread position: | 313-836 |
| Cow position: | chr7:1014770-1015293 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 222 |
| Conread position: | 313-837 |
| Cow position: | chr7:3180116-3180640 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 398 |
| Conread position: | 313-837 |
| Cow position: | chr7:8242882-8243405 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 325 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 296, 309 |
| Conread position: | 313-837 |
| Cow position: | chr7:8278015-8278537 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 229, 214 |
| Conread position: | 313-837 |
| Cow position: | chr7:8324816-8325340 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 212 |
| Conread position: | 313-837 |
| Cow position: | chr7:8324984-8325508 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 313-837 |
| Cow position: | chr7:8325572-8326096 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 462 |
| Conread position: | 313-837 |
| Cow position: | chr7:18390079-18390601 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 313-840 |
| Cow position: | chr7:1014356-1014877 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 219 |
| Conread position: | 313-840 |
| Cow position: | chr7:1014440-1014961 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 202 |
| Conread position: | 313-840 |
| Cow position: | chr7:3179780-3180307 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 132 |
| Conread position: | 313-840 |
| Cow position: | chr7:3179948-3180475 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 313-840 |
| Cow position: | chr7:3180200-3180727 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 393 |
| Conread position: | 313-840 |
| Cow position: | chr7:8242966-8243492 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 144 |
| Conread position: | 313-840 |
| Cow position: | chr7:8243218-8243744 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 163 |
| Conread position: | 313-840 |
| Cow position: | chr7:8277343-8277870 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 313-840 |
| Cow position: | chr7:8324900-8325427 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 313-840 |
| Cow position: | chr7:8325404-8325931 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 313-840 |
| Cow position: | chr7:11601271-11600745 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 314-625 |
| Cow position: | chr7:18390498-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 231, 227 |
| Conread position: | 314-812 |
| Cow position: | chr7:42878772-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 383 |
| Conread position: | 314-831 |
| Cow position: | chr7:3180285-3180800 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 507, 0 |
| Conread position: | 314-836 |
| Cow position: | chr7:18390162-18390684 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 384 |
| Conread position: | 314-837 |
| Cow position: | chr7:1014525-1015042 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 125 |
| Conread position: | 314-837 |
| Cow position: | chr7:11601019-11600496 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 220 |
| Conread position: | 314-840 |
| Cow position: | chr7:8325489-8326015 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 222 |
| Conread position: | 314-840 |
| Cow position: | chr7:42879108-42878582 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 379 |
| Conread position: | 315-834 |
| Cow position: | chr7:1439726-1440242 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 325-687 |
| Cow position: | chr7:8325752-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 305, 285 |
| Conread position: | 325-835 |
| Cow position: | chr7:1014284-1014788 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 281 |
| Conread position: | 325-836 |
| Cow position: | chr7:11434805-11434301 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 209, 198 |
| Conread position: | 325-837 |
| Cow position: | chr7:8243565-8244075 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 325-840 |
| Cow position: | chr7:3180044-3180559 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 360 |
| Conread position: | 325-840 |
| Cow position: | chr7:8324744-8325259 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 326-840 |
| Cow position: | chr7:3179709-3180223 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 372 |
| Conread position: | 329-732 |
| Cow position: | chr7:11600836-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 354 |
| Conread position: | 329-790 |
| Cow position: | chr7:18390345-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 423 |
| Conread position: | 329-827 |
| Cow position: | chr7:42879009-42878512 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 208 |
| Conread position: | 329-837 |
| Cow position: | chr7:1014870-1015378 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 369 |
| Conread position: | 329-840 |
| Cow position: | chr7:1438098-1438607 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 351, 103 |
| Conread position: | 329-840 |
| Cow position: | chr7:3179880-3180391 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-840 |
| Cow position: | chr7:8243401-8243912 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 329-840 |
| Cow position: | chr7:8277527-8278038 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 279 |
| Conread position: | 329-840 |
| Cow position: | chr7:8277779-8278290 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 116 |
| Conread position: | 334-836 |
| Cow position: | chr7:42879172-42878670 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 335-719 |
| Cow position: | chr7:18390435-18390819 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 339-836 |
| Cow position: | chr7:1438190-1438687 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 344-609 |
| Cow position: | chr7:11434541-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 351-840 |
| Cow position: | chr7:18389945-18390436 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 375-812 |
| Cow position: | chr7:11600874-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 233 |
| Conread position: | 376-837 |
| Cow position: | chr7:8277236-8277699 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 377-775 |
| Cow position: | chr7:1438312-1438710 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 128, 124 |
| Conread position: | 377-838 |
| Cow position: | chr7:1014168-1014629 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 380-840 |
| Cow position: | chr7:1014669-1015129 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 328 |
| Conread position: | 380-840 |
| Cow position: | chr7:1439452-1439913 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 136 |
| Conread position: | 383-771 |
| Cow position: | chr7:11434663-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 62 |
| Conread position: | 383-836 |
| Cow position: | chr7:42879458-42879006 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 389-836 |
| Cow position: | chr7:42879369-42878922 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-836 |
| Cow position: | chr7:11434822-11434385 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 394-837 |
| Cow position: | chr7:11434974-11434545 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 224, 130 |
| Conread position: | 398-836 |
| Cow position: | chr7:42879276-42878838 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 147 |
| Conread position: | 403-837 |
| Cow position: | chr7:8242804-8243238 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 144, 134 |
| Conread position: | 407-836 |
| Cow position: | chr7:3179706-3180135 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 456-840 |
| Cow position: | chr7:1014079-1014463 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 463-837 |
| Cow position: | chr7:1439451-1439827 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 77 |
| Conread position: | 478-837 |
| Cow position: | chr7:8324729-8325088 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 491-840 |
| Cow position: | chr7:3179706-3180055 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 215 |
| Conread position: | 544-840 |
| Cow position: | chr7:1439448-1439747 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 229, 139 |
Show alignments to all cow chromosomes.