Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 311-814 |
| Cow position: | chr8:48406709-48406197 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 312-835 |
| Cow position: | chr8:48407632-48407109 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 385 |
| Conread position: | 312-835 |
| Cow position: | chr8:55580735-55581259 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 387 |
| Conread position: | 313-514 |
| Cow position: | chr8:45201773-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 166, 177 |
| Conread position: | 313-605 |
| Cow position: | chr8:46817052-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-681 |
| Cow position: | chr8:6957997-6957630 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 208, 226 |
| Conread position: | 313-771 |
| Cow position: | chr8:55581241-55581699 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-834 |
| Cow position: | chr8:46816212-46816733 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 313-836 |
| Cow position: | chr8:46816464-46816987 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 386 |
| Conread position: | 313-836 |
| Cow position: | chr8:46816716-46817239 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 313-836 |
| Cow position: | chr8:46816800-46817323 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 219 |
| Conread position: | 313-840 |
| Cow position: | chr8:45201101-45201628 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 470 |
| Conread position: | 313-840 |
| Cow position: | chr8:45201185-45201712 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 384 |
| Conread position: | 313-840 |
| Cow position: | chr8:55580989-55581516 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 382 |
| Conread position: | 313-840 |
| Cow position: | chr8:55581157-55581684 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 385 |
| Conread position: | 314-815 |
| Cow position: | chr8:46816885-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-829 |
| Cow position: | chr8:48407042-48406527 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 218 |
| Conread position: | 314-837 |
| Cow position: | chr8:45201018-45201541 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 139 |
| Conread position: | 314-837 |
| Cow position: | chr8:45201270-45201793 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-837 |
| Cow position: | chr8:45201522-45202038 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 223 |
| Conread position: | 314-840 |
| Cow position: | chr8:45201438-45201964 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-840 |
| Cow position: | chr8:46816381-46816907 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 383 |
| Conread position: | 314-840 |
| Cow position: | chr8:48407210-48406684 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 379 |
| Conread position: | 314-840 |
| Cow position: | chr8:48407294-48406768 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 316-836 |
| Cow position: | chr8:46815874-46816399 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 316-837 |
| Cow position: | chr8:45200936-45201457 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 324-840 |
| Cow position: | chr8:55580832-55581348 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 216 |
| Conread position: | 325-835 |
| Cow position: | chr8:45201365-45201875 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 212 |
| Conread position: | 325-835 |
| Cow position: | chr8:48406863-48406353 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 129 |
| Conread position: | 327-736 |
| Cow position: | chr8:46816982-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 215 |
| Conread position: | 327-840 |
| Cow position: | chr8:48406945-48406432 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 327-840 |
| Cow position: | chr8:48407449-48406936 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 210 |
| Conread position: | 328-836 |
| Cow position: | chr8:55580920-55581428 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-829 |
| Cow position: | chr8:46816144-46816644 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 133 |
| Conread position: | 329-834 |
| Cow position: | chr8:46816648-46817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 361 |
| Conread position: | 329-840 |
| Cow position: | chr8:46816060-46816571 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 369 |
| Conread position: | 331-834 |
| Cow position: | chr8:46815978-46816481 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 201 |
| Conread position: | 335-811 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 197 |
| Conread position: | 335-835 |
| Cow position: | chr8:46816318-46816818 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 197 |
| Conread position: | 377-840 |
| Cow position: | chr8:48407315-48406852 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 410 |
| Conread position: | 381-836 |
| Cow position: | chr8:48407647-48407192 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-835 |
| Cow position: | chr8:46815865-46816314 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 214 |
| Conread position: | 397-838 |
| Cow position: | chr8:55580736-55581178 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 398-824 |
| Cow position: | chr8:48406706-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 389 |
| Conread position: | 401-840 |
| Cow position: | chr8:45200937-45201376 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 455-836 |
| Cow position: | chr8:48407657-48407276 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 481-840 |
| Cow position: | chr8:55580736-55581096 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 218 |
| Conread position: | 545-839 |
| Cow position: | chr8:45200829-45201123 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 107, 99 |
| Conread position: | 556-836 |
| Cow position: | chr8:46815864-46816147 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 565-837 |
| Cow position: | chr8:48407631-48407359 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 587-837 |
| Cow position: | chr8:6958059-6957809 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-840 |
| Cow position: | chr8:6958059-6957890 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 26 |
Show alignments to all cow chromosomes.