Cow genome map
| Conread name: | Ss1.1-rpldo0139_p24.5 |
| Conread position: | 307-834 |
| Cow position: | chrX:29045267-29044740 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 310-834 |
| Cow position: | chrX:25325591-25325067 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 299 |
| Conread position: | 313-591 |
| Cow position: | chrX:25324496-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 313-765 |
| Cow position: | chrX:29045828-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 313-828 |
| Cow position: | chrX:25325252-25324737 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 384 |
| Conread position: | 313-829 |
| Cow position: | chrX:25324830-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 13 |
| Conread position: | 313-834 |
| Cow position: | chrX:25324916-25324395 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 221 |
| Conread position: | 313-834 |
| Cow position: | chrX:25325168-25324647 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 313-834 |
| Cow position: | chrX:25325756-25325235 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 151 |
| Conread position: | 313-835 |
| Cow position: | chrX:25325084-25324562 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 224 |
| Conread position: | 313-836 |
| Cow position: | chrX:25325000-25324477 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 384 |
| Conread position: | 313-836 |
| Cow position: | chrX:29045177-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 313-837 |
| Cow position: | chrX:25325420-25324896 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 385 |
| Conread position: | 313-838 |
| Cow position: | chrX:25309889-25310414 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 313-840 |
| Cow position: | chrX:12627354-12627879 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 143, 149 |
| Conread position: | 313-840 |
| Cow position: | chrX:25325336-25324809 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 382 |
| Conread position: | 314-771 |
| Cow position: | chrX:12627271-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 119, 132 |
| Conread position: | 314-834 |
| Cow position: | chrX:25310058-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 219 |
| Conread position: | 314-840 |
| Cow position: | chrX:25309806-25310332 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 390 |
| Conread position: | 315-835 |
| Cow position: | chrX:25309725-25310243 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 11 |
| Conread position: | 315-840 |
| Cow position: | chrX:25325502-25324977 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 218 |
| Conread position: | 323-688 |
| Cow position: | chrX:12627698-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 325-835 |
| Cow position: | chrX:12627533-12628042 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 125, 136 |
| Conread position: | 327-834 |
| Cow position: | chrX:29045331-29044824 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 174 |
| Conread position: | 328-743 |
| Cow position: | chrX:13826682-13826267 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 329-779 |
| Cow position: | chrX:25324648-25324202 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 208 |
| Conread position: | 334-827 |
| Cow position: | chrX:13826760-13826268 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 334-833 |
| Cow position: | chrX:25324727-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 364-834 |
| Cow position: | chrX:25325789-25325319 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 364-835 |
| Cow position: | chrX:25309689-25310159 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 5 |
| Conread position: | 377-696 |
| Cow position: | chrX:13826549-13826230 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-836 |
| Cow position: | chrX:29045359-29044906 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 383-604 |
| Cow position: | chrX:12627842-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 390-840 |
| Cow position: | chrX:25325847-25325397 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 58 |
| Conread position: | 393-817 |
| Cow position: | chrX:29045832-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 304 |
| Conread position: | 420-840 |
| Cow position: | chrX:25309660-25310080 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 96 |
| Conread position: | 422-834 |
| Cow position: | chrX:13826924-13826512 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 461-837 |
| Cow position: | chrX:12627334-12627708 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 462-840 |
| Cow position: | chrX:29045361-29044986 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 242, 29 |
| Conread position: | 472-835 |
| Cow position: | chrX:29045837-29045474 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 497-772 |
| Cow position: | chrX:13826933-13826658 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 40 |
Show alignments to all cow chromosomes.